View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_low_1 (Length: 565)
Name: NF7656_low_1
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 38139150 - 38139275
Alignment:
| Q |
20 |
aggcctatgctccaagagttcttcaacatcatatgaagacaaatttacaatgtttgtgcgagagtgtgagtcaagctcaagggcggatccaccataagac |
119 |
Q |
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| T |
38139150 |
aggcctatgctccaagagttcttcaacatcatctgaagacaaatttgcaatgtttgtgcgagagtgtgagtcaagctcaagggcggatccaccataaggc |
38139249 |
T |
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| Q |
120 |
atggtgtggctaacgttacgtggaag |
145 |
Q |
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| T |
38139250 |
atggtgcggctaacgttacgtggaag |
38139275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 187 - 396
Target Start/End: Original strand, 38139313 - 38139528
Alignment:
| Q |
187 |
gtattagcatttccatataaagcatgatcacgnnnnnnnnnaaaggagcatgatcacatttgatcttgtcataaattataattatgacagttgactgtcc |
286 |
Q |
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| T |
38139313 |
gtattagcatttccatataaagcatgatcacgtttttttt-aaaggagcatgatcacatttgatcttgtcataaattataattacgacagttgactgtcc |
38139411 |
T |
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| Q |
287 |
ggctaaattgatggcacaacattatt-------nnnnnnnnnnntctgatataccattgactattttcagtttaatcagcagtatttgtgtctttcaaaa |
379 |
Q |
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| T |
38139412 |
ggctaaattgatggcacaacattattaaaaaaaaaaaaaaaaaatctgatataccattgactattttcattttaatcagcggtatttgtgtcttttaaaa |
38139511 |
T |
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| Q |
380 |
atagaaaacccttcctc |
396 |
Q |
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| T |
38139512 |
atagaaaacacttcctc |
38139528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 39315292 - 39315214
Alignment:
| Q |
17 |
aataggcctatgctccaagagttcttcaacatcatatgaagacaaatttacaatgtttgtgcgagagtgtgagtcaagc |
95 |
Q |
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|||||||||||| ||||||| |||||||| | ||| ||| || |||| | |||||| |||| | ||||||||||||||| |
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| T |
39315292 |
aataggcctatgttccaagaattcttcaatagcatctgatgataaatctgcaatgtgtgtgtgtgagtgtgagtcaagc |
39315214 |
T |
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