View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_low_10 (Length: 214)
Name: NF7656_low_10
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 50632647 - 50632529
Alignment:
| Q |
1 |
ggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaagcaacaaacaact |
100 |
Q |
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| T |
50632647 |
ggtcaacaataaacaagctatccgtgacatgaaagggggtttaaccttaaaatcactatgtcgactcaaagcccatggttacaaaaagcaacaaacaact |
50632548 |
T |
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| Q |
101 |
tacatgtgacaacaataat |
119 |
Q |
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||||||||||||||||||| |
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| T |
50632547 |
tacatgtgacaacaataat |
50632529 |
T |
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Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 50635605 - 50635692
Alignment:
| Q |
112 |
acaataatcgaacaataagaaataattaataaatattgtgaaaggagcaaatgcgaagttcatggcagcaatttgattagacaaatat |
199 |
Q |
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| T |
50635605 |
acaataatcgaacaataagaaataattaataaatattgtgaaaggagcaaatgcgaagttcatagcagcaatttgattagacaaatat |
50635692 |
T |
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