View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7656_low_2 (Length: 500)

Name: NF7656_low_2
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7656_low_2
NF7656_low_2
[»] chr3 (17 HSPs)
chr3 (17-482)||(4142181-4142646)
chr3 (17-482)||(4157991-4158456)
chr3 (35-480)||(3754147-3754589)
chr3 (35-166)||(3745866-3745997)
chr3 (351-412)||(3745614-3745675)
chr3 (355-412)||(2441627-2441684)
chr3 (83-154)||(2686425-2686496)
chr3 (102-156)||(2678528-2678582)
chr3 (267-313)||(23231261-23231307)
chr3 (260-313)||(23235146-23235199)
chr3 (245-297)||(2678671-2678723)
chr3 (435-478)||(12132625-12132668)
chr3 (358-409)||(12132703-12132754)
chr3 (353-407)||(2686698-2686752)
chr3 (431-465)||(3745558-3745592)
chr3 (182-220)||(3745803-3745841)
chr3 (245-314)||(2686584-2686653)
[»] chr5 (5 HSPs)
chr5 (31-279)||(11081555-11081803)
chr5 (357-411)||(2067457-2067511)
chr5 (353-401)||(1428079-1428127)
chr5 (281-313)||(6402077-6402109)
chr5 (444-480)||(41973942-41973978)
[»] chr4 (1 HSPs)
chr4 (245-405)||(20020041-20020201)
[»] chr7 (2 HSPs)
chr7 (40-164)||(1078245-1078369)
chr7 (435-478)||(1078655-1078698)
[»] scaffold0200 (1 HSPs)
scaffold0200 (444-480)||(1250-1286)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 4142181 - 4142646
Alignment:
Q  17 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142181 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 4142280  T
Q  117 tttgataagactccattgccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaaccaattaattgtgccactcacaaattc 216  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  4142281 tttgataagactcctttgccaaatcaaaagaaacaataaagcatggacattccaatgattcttcggagaacaaccaattaattgtgccactcacaaattc 4142380  T
Q  217 ccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttgtta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142381 ccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttgtta 4142480  T
Q  317 acaaaactatcatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatgacat 416  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142481 acaaaactataatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatgacat 4142580  T
Q  417 ttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaac 482  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142581 ttagaccagtcgtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaac 4142646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 4157991 - 4158456
Alignment:
Q  17 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 116  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4157991 acatcataaccagaagtggtcacgcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatct 4158090  T
Q  117 tttgataagactccattgccaaatcaaatgaaacaataaagcgtggacattccgacgatt---cttcggagaacaaccaattaattgtgccactcacaaa 213  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |  | |   |||  ||||||||||||||||| || |||||||||||    
T  4158091 tttgataagactcctttgccaaatcaaatgaaacaataaagcatggatattcccagaactgctctttagagaacaaccaattaatcgtaccactcacaaa 4158190  T
Q  214 ttcccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttg 313  Q
    |||||||||| |    ||||||  |||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  4158191 ttcccccttcatg---ggaacaataagaccgccaaaatgatagtcctgaatggttctccaaatattagtacccaaagtatgaacctttacttgagttttg 4158287  T
Q  314 ttaacaaaactatcatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 413  Q
    |||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4158288 ttaaaaaaactatcatcctcatcaagaactaggtattcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 4158387  T
Q  414 catttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaac 482  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4158388 catttacaccagtcatgggcttttcaaaaaggggcaactccttgaattttcttgttgaagggttccaac 4158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 35 - 480
Target Start/End: Complemental strand, 3754589 - 3754147
Alignment:
Q  35 gtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattg 134  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  3754589 gtcacgcacaagcaatccctcaaaacactcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatgactcctttg 3754490  T
Q  135 ccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaaccaattaattgtgccactcacaaattcccccttcttaactggaac 234  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3754489 ccaaatcaaaagaaacaataaagcgtggacattccgatgattcttcggacaacaaccaattaattgtgccactcacaaattcccccttcataactggaac 3754390  T
Q  235 aggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttgttaacaaaactatcatcctca 334  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| |||| |||||||    
T  3754389 aggaagacctccaaaaggatagtcctggatggttctccatatattagtacccaaagtatgaacctttactttatttttgttaaaaaacctataatcctca 3754290  T
Q  335 tcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggct 434  Q
    ||||||| | ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |  ||||   | | | ||    
T  3754289 tcaagaactaggtaggcaagaacaacaaccaccttgtaattatcgtttaaagaatcatagccaaagccaaacgtcatgagagtaggacc---attcgact 3754193  T
Q  435 tttcaaaaaggggcaactccttgaattttcttgtggaagggttcca 480  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||||    
T  3754192 tttcataaaggggcaactgcttgattttttttgtggaagggttcca 3754147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 3745997 - 3745866
Alignment:
Q  35 gtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattg 134  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||  ||||| | |||||| | | |||||||||||||||||||| ||| |||| |||    
T  3745997 gtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctatccctccaatactaggaggtgaaatcttttgaaaagtctcctttg 3745898  T
Q  135 ccaaatcaaatgaaacaataaagcgtggacat 166  Q
    |||||||||| ||||||||||||| |||||||    
T  3745897 ccaaatcaaaagaaacaataaagcatggacat 3745866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 3745675 - 3745614
Alignment:
Q  351 caagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 412  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  3745675 caagaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatg 3745614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 2441684 - 2441627
Alignment:
Q  355 aacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 412  Q
    |||||||||||| ||||||||||| ||  |||||||||||||||||||||||| ||||    
T  2441684 aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaacgccatg 2441627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 2686425 - 2686496
Alignment:
Q  83 acatccacccctcccaaattaggaggtgaaatcttttgataagactccattgccaaatcaaatgaaacaata 154  Q
    ||||| ||||||||  || ||||||| || |||||||||||||||||  ||||||||||||| |||||||||    
T  2686425 acatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 2686496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 2678528 - 2678582
Alignment:
Q  102 taggaggtgaaatcttttgataagactccattgccaaatcaaatgaaacaataaa 156  Q
    |||||||||| | |||||||||||||||  ||||||||||||| |||||||||||    
T  2678528 taggaggtgatagcttttgataagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 23231261 - 23231307
Alignment:
Q  267 ttctccatatattagtacccaaagtatgaaccattacttgagttttg 313  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||    
T  23231261 ttctccatgaattagtacccaaagtatgaaccattccttgagttttg 23231307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 23235146 - 23235199
Alignment:
Q  260 tgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttg 313  Q
    ||||| |||||||||  ||||||||||||||||||||||||  |||||||||||    
T  23235146 tgaattgttctccatgaattagtacccaaagtatgaaccatgccttgagttttg 23235199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 2678671 - 2678723
Alignment:
Q  245 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaac 297  Q
    ||||||||| |||| |||||| ||||||| ||||||| |||||||||||||||    
T  2678671 ccaaaaggaaactcttgaatgtttctccaaatattagaacccaaagtatgaac 2678723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 12132668 - 12132625
Alignment:
Q  435 tttcaaaaaggggcaactccttgaattttcttgtggaagggttc 478  Q
    |||||| ||||||||||||||||||||||||  |||||||||||    
T  12132668 tttcaagaaggggcaactccttgaattttctaatggaagggttc 12132625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 12132754 - 12132703
Alignment:
Q  358 aacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtc 409  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||| ||||    
T  12132754 aacaaccaccttgtaattatcagtacaagaatcatagccaaagccaagcgtc 12132703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 2686698 - 2686752
Alignment:
Q  353 agaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacg 407  Q
    |||||||||| |||||||||||| |||||  ||||||| ||||| ||||||||||    
T  2686698 agaacaacaatcaccttgtaattctccttaaaagaatcgtagccgaagccaaacg 2686752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 465
Target Start/End: Complemental strand, 3745592 - 3745558
Alignment:
Q  431 ggcttttcaaaaaggggcaactccttgaattttct 465  Q
    ||||||| |||||||||||||||||||||||||||    
T  3745592 ggcttttgaaaaaggggcaactccttgaattttct 3745558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3745841 - 3745803
Alignment:
Q  182 gagaacaaccaattaattgtgccactcacaaattccccc 220  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  3745841 gagaacaaccaattaatagtgccactcacaaatttcccc 3745803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 2686584 - 2686653
Alignment:
Q  245 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttgt 314  Q
    ||||||||| |||| || ||| || |||| ||||||| |||||||||||||||| |||||| || |||||    
T  2686584 ccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttacttcagatttgt 2686653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 9e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 11081803 - 11081555
Alignment:
Q  31 agtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactcc 130  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  11081803 agtcgtcacacacaagcaatccctcaaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcc 11081704  T
Q  131 attgccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaacc-aattaattgtgccactcacaaattcccccttcttaact 229  Q
     |||||||||| ||  ||||||||||||||||||||||| |  |  | |  |||||||||| ||||||||| |||||||||||||||||| ||| ||||     
T  11081703 tttgccaaatcgaaacaaacaataaagcgtggacattcccaaca-ccattagagaacaaccaaattaattgcgccactcacaaattcccctttcataacg 11081605  T
Q  230 ggaacaggaagacctccaaaaggatactcctgaatggttctccatatatt 279  Q
    ||||||  |||||| |||||| |||| ||||||||||||||||| |||||    
T  11081604 ggaacaataagaccgccaaaaagataatcctgaatggttctccaaatatt 11081555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 2067457 - 2067511
Alignment:
Q  357 caacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcat 411  Q
    ||||||||||||||||| ||||  |  |||||||||||||||| |||||||||||    
T  2067457 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 2067511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 1428079 - 1428127
Alignment:
Q  353 agaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagc 401  Q
    |||||||||| |||||||||||||||| || || |||||||||| ||||    
T  1428079 agaacaacaatcaccttgtaattatccgttaaacaatcatagccgaagc 1428127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 6402077 - 6402109
Alignment:
Q  281 gtacccaaagtatgaaccattacttgagttttg 313  Q
    |||||||||||||||||||| ||||||||||||    
T  6402077 gtacccaaagtatgaaccataacttgagttttg 6402109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 41973942 - 41973978
Alignment:
Q  444 ggggcaactccttgaattttcttgtggaagggttcca 480  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  41973942 ggggcaattccttgaattttctagtggaagggttcca 41973978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 405
Target Start/End: Original strand, 20020041 - 20020201
Alignment:
Q  245 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattacttgagttttgttaacaaaactatcatcctcatcaagaaatt 344  Q
    ||||||||| ||||||||||| || |||| | |||||||||||| ||||||||||| |  | ||||||||| ||| || ||  ||  | |||||| |       
T  20020041 ccaaaaggacactcctgaatgcttttccaaaaattagtacccaaggtatgaaccatcatatcagttttgttgacataattaagattattatcaagtacgg 20020140  T
Q  345 ggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaa 405  Q
     |||  | | ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20020141 tgtatcccaaaacaacaaccaccttgtaattgtccgttgaagaatcatagccaaagccaaa 20020201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 1078245 - 1078369
Alignment:
Q  40 gcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattgccaaa 139  Q
    |||||||||||||||||| ||||||||  |  | |||| ||  ||||| ||||||||  ||| ||||||  ||| |||||||||||| ||  || |||||    
T  1078245 gcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttgataagattcttttcccaaa 1078344  T
Q  140 tcaaatgaaacaataaagcgtggac 164  Q
    ||||| |||||||||||||| ||||    
T  1078345 tcaaaagaaacaataaagcgaggac 1078369  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 1078655 - 1078698
Alignment:
Q  435 tttcaaaaaggggcaactccttgaattttcttgtggaagggttc 478  Q
    |||||| ||||||||||||||||||||||||  |||||||||||    
T  1078655 tttcaagaaggggcaactccttgaattttctaatggaagggttc 1078698  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 1250 - 1286
Alignment:
Q  444 ggggcaactccttgaattttcttgtggaagggttcca 480  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  1250 ggggcaattccttgaattttctagtggaagggttcca 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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