View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_low_4 (Length: 422)
Name: NF7656_low_4
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 6813534 - 6813121
Alignment:
| Q |
1 |
agaagacacattgttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813534 |
agaagacacattgttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatccta |
6813435 |
T |
|
| Q |
101 |
cgaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813434 |
cgaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctca |
6813335 |
T |
|
| Q |
201 |
tttcctatcgaaatttcgaaggcgaaactcctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatggtcgccagcagaacaa |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||| |
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| T |
6813334 |
tttcctgtcgaaatttcgaaggcgaaactcctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatagtcgtcatcaggacaa |
6813235 |
T |
|
| Q |
301 |
agatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttatat |
400 |
Q |
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||||||| | ||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813234 |
agatgattattcagtttcaagaaaaaataatggggacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttatat |
6813135 |
T |
|
| Q |
401 |
atgttcatctcatt |
414 |
Q |
| |
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|||||||| ||||| |
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| T |
6813134 |
atgttcatttcatt |
6813121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 6820090 - 6819677
Alignment:
| Q |
1 |
agaagacacattgttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatccta |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||| || || ||||| |||| | |||||||| |
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| T |
6820090 |
agaagacacagtgttacacattgctgtgtatgtgagccaaacatgctttgtgacagccttgttagataacatatgccaagacgtgtgcatgaacatccta |
6819991 |
T |
|
| Q |
101 |
cgaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctca |
200 |
Q |
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||| ||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
6819990 |
agaacgcaaaactcgaagggaaataccccccttcatgttgctgcagagcttgggaatgtagacatttgcaacaacatagctaaaagatgtcctatcctca |
6819891 |
T |
|
| Q |
201 |
tttcctatcgaaatttcgaaggcgaaactcctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatggtcgccagcagaacaa |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||| ||| |||||||| |
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| T |
6819890 |
tttcgtatcgaaatttcgaaggcgaaactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaa |
6819791 |
T |
|
| Q |
301 |
agatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttatat |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6819790 |
agatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttctat |
6819691 |
T |
|
| Q |
401 |
atgttcatctcatt |
414 |
Q |
| |
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|||||||| ||||| |
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| T |
6819690 |
atgttcatttcatt |
6819677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 6834566 - 6834180
Alignment:
| Q |
1 |
agaagacacattgttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatccta |
100 |
Q |
| |
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||||||||| ||||||||||||| | || ||| |||||| | ||||||||||||||||||||||| || ||| |||| ||||| || |||||||| |
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| T |
6834566 |
agaagacacggtgttacacattgccatatacgtgagccaaacaatttttgtgacaaccttgttagataacataagccaagatatgtgccggaacatccta |
6834467 |
T |
|
| Q |
101 |
cgaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |
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| T |
6834466 |
agaatgcaaaactcaaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaatatagccagaagagatcccatcctca |
6834367 |
T |
|
| Q |
201 |
tttcctatcgaaatttcgaaggcgaaactcctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatggtcgccagcagaacaa |
300 |
Q |
| |
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|||| ||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||| | | |||||||| |
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| T |
6834366 |
tttcatatcgaaattttgaaggcgagactcctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcacgaacagaacaa |
6834267 |
T |
|
| Q |
301 |
agatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6834266 |
agatgatgactcactttcaatcaaaaacaatggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
6834180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 34778905 - 34778826
Alignment:
| Q |
273 |
tttgtcttcatggtcgccagcagaacaaagatgatgactcactttcaat--caaaaacaatggagacactattcttcatt |
350 |
Q |
| |
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||||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
34778905 |
tttgtcttcatggtcaccaacagaataaagatgatgattcactttcaataaaaaaaacaatggagacaccattcttcatt |
34778826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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