View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_low_8 (Length: 247)
Name: NF7656_low_8
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6813537 - 6813761
Alignment:
| Q |
1 |
ttttgtgatcttggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctctaatggcatgattaaacaaactttcaagt |
100 |
Q |
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| T |
6813537 |
ttttgtgatcttggcctccaatactttagggtttttttcatatgactctataacttctctccattgccctctaatggcatgattaaacaaactttcaagt |
6813636 |
T |
|
| Q |
101 |
tcaatctcagccattttaagagctagctaaccaagctttgcaatggttagaacannnnnnnnnnnnnnnnagagagtgattgaagagcttaattagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6813637 |
tcaatctcagccattttaagagctagctaaccaagctttgcaatggttagaacatgtgtgtgtgt------gagagtgattgaagagcttaattagttat |
6813730 |
T |
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| Q |
201 |
attccttgtttatgagtacctacctatatat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6813731 |
attccttgtttatgagtacctacctatatat |
6813761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6834569 - 6834722
Alignment:
| Q |
1 |
ttttgtgatcttggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctctaatggcatgattaaacaaactttcaagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6834569 |
ttttgtgatctttgcctccaatacttcagggttttgctcatatgactctaaaacttctctccattgccctctcatggcatgattaaacaaactttcaaac |
6834668 |
T |
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| Q |
101 |
tcaatctcagccattttaagagctagctaaccaagctttgcaatggttagaaca |
154 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6834669 |
tcaacttcagccattttaagagctagctaaccaagctttagaatggttagaaca |
6834722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 6820096 - 6820224
Alignment:
| Q |
4 |
tgtgatcttggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctctaatggcatgattaaacaaactttcaagttca |
103 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||| |
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| T |
6820096 |
tgtgatctttgcctccaatacttcaggggttttctcatatgactctaaaacttctctccattgccctctcattgcatgattaaacaaactttcaaactca |
6820195 |
T |
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| Q |
104 |
atctcagccattttaagagctagctaacc |
132 |
Q |
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|| ||||||||||||||||||||| |||| |
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| T |
6820196 |
atttcagccattttaagagctagccaacc |
6820224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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