View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7657_low_1 (Length: 448)
Name: NF7657_low_1
Description: NF7657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7657_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 52109062 - 52108649
Alignment:
| Q |
20 |
aatccacttccaaatccccaaacaatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgc |
119 |
Q |
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| T |
52109062 |
aatccacttccaaatccccaaa---tttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttccggaatacgagatgc |
52108966 |
T |
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| Q |
120 |
ctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatga |
219 |
Q |
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| T |
52108965 |
ctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatga |
52108866 |
T |
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| Q |
220 |
attgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtat |
319 |
Q |
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| T |
52108865 |
attgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtat |
52108766 |
T |
|
| Q |
320 |
cctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttatta |
419 |
Q |
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| T |
52108765 |
cctttgattttgggttgtagtgttagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttatta |
52108666 |
T |
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| Q |
420 |
agaattatccacaggtt |
436 |
Q |
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| T |
52108665 |
agaattatccacaggtt |
52108649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 43 - 436
Target Start/End: Complemental strand, 44520314 - 44519922
Alignment:
| Q |
43 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt |
142 |
Q |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
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| Q |
143 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
242 |
Q |
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| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
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| Q |
243 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgt |
342 |
Q |
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| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgt |
44520015 |
T |
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| Q |
343 |
tagaaaaaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
436 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520014 |
gagaaaaaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
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