View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7657_low_3 (Length: 411)
Name: NF7657_low_3
Description: NF7657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7657_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 35446355 - 35446145
Alignment:
| Q |
79 |
tgattttgagttatttaggaacgatttttgtatatttaacnnnnnnnnaaggagtatatttaatatttaattatttgtaaggcaagnnnnnnnnaaaaat |
178 |
Q |
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| T |
35446355 |
tgattttgagttaattaggaacgatttttgtatatttaa-atttttttaaggagtatatttaatatttaattatttgtaaggcaagttttttt-aaaaat |
35446258 |
T |
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| Q |
179 |
aaataaaatctgattctannnnnnnnn---accaaaacaattattaaaatccgattctattatattaattaaggcaagaattttgaaaattaaataaatc |
275 |
Q |
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| T |
35446257 |
aaataaaatctgattctattttttttttttaccaaaacaattattaaaatccgattctattatattaattaaggcaagtattttgaaaattaaataaatc |
35446158 |
T |
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| Q |
276 |
agattctattatc |
288 |
Q |
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| T |
35446157 |
agattctattatc |
35446145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 35443007 - 35443045
Alignment:
| Q |
5 |
ataaatatatgtatttttatgattttgtaaccaaacaaa |
43 |
Q |
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| T |
35443007 |
ataaatatatgtatttttagcattttgtaaccaaacaaa |
35443045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 395
Target Start/End: Complemental strand, 35446066 - 35446038
Alignment:
| Q |
367 |
cctataatattaaacatgaattatcatta |
395 |
Q |
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| T |
35446066 |
cctataatattaaacatgaattatcatta |
35446038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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