View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7658_high_4 (Length: 247)
Name: NF7658_high_4
Description: NF7658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7658_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 48038107 - 48037869
Alignment:
| Q |
19 |
tgttccactgttttcattttaactaataaatataa----------atcaaacatttcacacagaaaatagatttaacattttttaaaactcggaaaattt |
108 |
Q |
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| T |
48038107 |
tgttccactgttttcattttaactaataaatataagagaatataaatcaaacatttcactcagaaaatagatttaacattttttaaaactcggaaaattt |
48038008 |
T |
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| Q |
109 |
ctcatcattattttcattgtctatgaaaatacaccatctctatttttgtcttccaatttccctctatcacaagattgccaatacaatattctagtctttg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48038007 |
ctcatcattattttcattgtctatgaaaatacaccatctctatttttgtcttccaatttccctctatcacaagattgccaatacaatattctagtctatg |
48037908 |
T |
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| Q |
209 |
ttgtttccatccaagaaatcgcaaattttcaatttgatc |
247 |
Q |
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| T |
48037907 |
ttgtttccatccaagaaatcgcaaattttcaatttgatc |
48037869 |
T |
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