View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7658_low_1 (Length: 441)

Name: NF7658_low_1
Description: NF7658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7658_low_1
NF7658_low_1
[»] chr2 (3 HSPs)
chr2 (317-424)||(21484875-21484982)
chr2 (264-424)||(37127536-37127696)
chr2 (107-219)||(21485081-21485193)
[»] chr3 (9 HSPs)
chr3 (315-417)||(10494329-10494431)
chr3 (264-424)||(12717962-12718121)
chr3 (264-431)||(33843875-33844042)
chr3 (264-424)||(27035921-27036081)
chr3 (315-426)||(27024715-27024826)
chr3 (317-424)||(51328566-51328673)
chr3 (107-176)||(33843718-33843787)
chr3 (107-177)||(10494582-10494652)
chr3 (107-177)||(51328801-51328871)
[»] chr1 (6 HSPs)
chr1 (264-410)||(21535438-21535584)
chr1 (274-418)||(41367157-41367301)
chr1 (107-159)||(21535688-21535740)
chr1 (290-424)||(28639557-28639691)
chr1 (344-424)||(41933080-41933160)
chr1 (107-144)||(29914030-29914067)
[»] chr5 (19 HSPs)
chr5 (18-102)||(9349599-9349683)
chr5 (18-89)||(9356991-9357062)
chr5 (18-84)||(9374118-9374184)
chr5 (18-102)||(9301195-9301279)
chr5 (26-89)||(9287858-9287921)
chr5 (18-89)||(9296980-9297051)
chr5 (18-85)||(9329372-9329439)
chr5 (19-89)||(9331612-9331682)
chr5 (19-89)||(9351340-9351410)
chr5 (18-84)||(9292373-9292439)
chr5 (18-84)||(9304813-9304879)
chr5 (26-90)||(9361406-9361470)
chr5 (107-177)||(27495363-27495431)
chr5 (322-399)||(23247908-23247985)
chr5 (26-66)||(9368242-9368282)
chr5 (107-175)||(9129325-9129393)
chr5 (269-393)||(17978779-17978903)
chr5 (114-174)||(17979015-17979075)
chr5 (264-320)||(27495515-27495571)
[»] chr7 (6 HSPs)
chr7 (290-415)||(1377744-1377869)
chr7 (264-431)||(1852518-1852689)
chr7 (117-175)||(1852362-1852420)
chr7 (291-424)||(18500731-18500862)
chr7 (125-178)||(26188081-26188134)
chr7 (117-177)||(1377561-1377621)
[»] chr6 (6 HSPs)
chr6 (343-431)||(25138245-25138331)
chr6 (314-424)||(28547247-28547357)
chr6 (264-406)||(20818893-20819035)
chr6 (107-177)||(25138508-25138578)
chr6 (122-177)||(20818731-20818786)
chr6 (313-390)||(17520257-17520334)
[»] scaffold0054 (2 HSPs)
scaffold0054 (264-424)||(18643-18803)
scaffold0054 (107-219)||(18846-18957)
[»] chr8 (7 HSPs)
chr8 (315-431)||(11457445-11457561)
chr8 (264-390)||(28284808-28284934)
chr8 (22-66)||(31467352-31467396)
chr8 (22-64)||(31477200-31477242)
chr8 (22-66)||(31502562-31502606)
chr8 (107-176)||(11457224-11457293)
chr8 (274-390)||(38621202-38621318)
[»] scaffold0160 (1 HSPs)
scaffold0160 (313-424)||(16908-17019)
[»] scaffold0001 (1 HSPs)
scaffold0001 (342-424)||(426865-426947)
[»] scaffold0210 (1 HSPs)
scaffold0210 (352-424)||(7777-7849)
[»] scaffold0048 (1 HSPs)
scaffold0048 (316-424)||(52237-52345)
[»] chr4 (1 HSPs)
chr4 (107-176)||(39807154-39807223)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 21484982 - 21484875
Alignment:
Q  317 ccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttca 416  Q
    |||| |||||||||||||| || || |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  21484982 ccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattcagatatgcaacataacgatgaaagacaaggtgtttca 21484883  T
Q  417 agcggatt 424  Q
    || |||||    
T  21484882 agaggatt 21484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 37127696 - 37127536
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||||||||| | | ||||||||||| ||  || | |||||||| ||||||||||| || || || |||||| |||| || ||||||    
T  37127696 tattctaggatggtgtttgaagaggtgtttttgaacttgatcttgcaggcctgccaactgacatatttcgatcggcaggccaacttgatcaagttcataa 37127597  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||||| |||| | ||||||  | ||||||||||||||||||||||||||||||| |||||    
T  37127596 aaacctcttcaaaattagatccgtaacataacgatgaaagacaaggtgtttcaagaggatt 37127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 21485193 - 21485081
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggggnnnnnnnnagagagatttcatggaaaat 206  Q
    |||||| ||||||||| |||||||||  ||||| ||||||||| ||||||||| ||||||||||| || ||         ||||||||||| ||||||||    
T  21485193 tataatccggaaatgagaaaaacattatggattgtataatccggacagcaccagaatgcctatttagatggtttttttttagagagatttcgtggaaaat 21485094  T
Q  207 aagtaatcaatgc 219  Q
    ||||||| |||||    
T  21485093 aagtaataaatgc 21485081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 315 - 417
Target Start/End: Complemental strand, 10494431 - 10494329
Alignment:
Q  315 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 414  Q
    |||||| |||||||||||||| || || |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  10494431 tgccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattcagatctgcaacataacgatgaaagacaaggtgttt 10494332  T
Q  415 caa 417  Q
    |||    
T  10494331 caa 10494329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 12717962 - 12718121
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||| | |||||||||| ||||||||||||||  | || ||||||||||| || ||||||    
T  12717962 tattctaggatggtgttggaagaggtgcttttgaactcgatccaactgacctgccaactgacatatttctatcagcaggccaactggatcaagttcataa 12718061  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||||||||  |||| |||| |||||||||||||||||||||| ||||||||||| |||||    
T  12718062 aaacctttt-tgattcagatatgcaacataacgatgaaagacatggtgtttcaagaggatt 12718121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 264 - 431
Target Start/End: Original strand, 33843875 - 33844042
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| || |||| ||||| | ||||||||||| | |||||| | ||| |||| ||| |||||| ||| || || ||| |||||||||| ||||||    
T  33843875 tattttaggatgatgttcgaagaggtgcttttgaactcgatccagctggcctaccaactgatatatttttatcggcaggccatctggatcgagttcataa 33843974  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggattatatatt 431  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||||||||| |||  ||||||||||    
T  33843975 aaaccttttcagattcagatctgcaacacaacgatgaaatacaaggtgtttcgagcaaattatatatt 33844042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 27035921 - 27036081
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | | ||||||||||| ||||   |  ||||||| ||||||||||  || || ||||||| ||||||||| ||||||    
T  27035921 tattctaggatggtgttcgaagaggtgtttttgaacttgatccaaaaggtctgccaactgacatattttgatcggcagaccaattggatcgagttcataa 27036020  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
     ||||| ||| || |||||| |||||||||||||||||||||||||||||||||| |||||    
T  27036021 gaacctcttcggaattagatctgcaacataacgatgaaagacaaggtgtttcaagaggatt 27036081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 426
Target Start/End: Original strand, 27024715 - 27024826
Alignment:
Q  315 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 414  Q
    |||||| ||||||||||  || || ||||||||||||||||  | |||| ||||| ||| || |||||| ||||||| ||||||||||||||||||||||    
T  27024715 tgccaactgacatattttgatcgggagaccaactggatcgattttataagaacctcttcggaattagatctgcaacacaacgatgaaagacaaggtgttt 27024814  T
Q  415 caagcggattat 426  Q
    |||| |||||||    
T  27024815 caagaggattat 27024826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 51328673 - 51328566
Alignment:
Q  317 ccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttca 416  Q
    |||| |||||||||| ||| || |  |||| | |||||||||||||||||||||||| |||| |||| |||||||| |||| ||||||||| ||||||||    
T  51328673 ccaactgacatatttatatcggaatgccaagtagatcgaggtcataaaaaccttttcggattcagatctgcaacattacgacgaaagacaaagtgtttca 51328574  T
Q  417 agcggatt 424  Q
    || |||||    
T  51328573 agaggatt 51328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 33843718 - 33843787
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 176  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||| ||||| |||| |||||||||||    
T  33843718 tataatccggaaatgacaaaaacgtttcggattatataatgcgaacaacaccagaatgtctatttggagg 33843787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 10494652 - 10494582
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    |||||| |||||||||||||||||||  ||||||||||||| |||| |||| | |||||||||||||||||    
T  10494652 tataatccggaaatgacaaaaacattctggattatataatctgaaccgcacgagaatgcctatttggaggg 10494582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 51328871 - 51328801
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    |||||| || ||||||||||||||| | |||||||||||||||||||  |||| |||||||| ||||||||    
T  51328871 tataatccgaaaatgacaaaaacatattggattatataatccgaacaaaaccataatgcctacttggaggg 51328801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 410
Target Start/End: Complemental strand, 21535584 - 21535438
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| |  |||||||||| | |||||| | | ||||||   ||||||||||||||| ||||||||||||||||| ||||||    
T  21535584 tattctaggatggtgttcgaagaggtacttttgaactcgatccagctggcttgccaacatacatatttctattggcagaccaactggatcgagttcataa 21535485  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggt 410  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||    
T  21535484 aaaccttttcggattcagatctgcaacataacgatgaaagacaaggt 21535438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 418
Target Start/End: Original strand, 41367157 - 41367301
Alignment:
Q  274 tggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttc 373  Q
    ||||||| ||||| | ||||||||||||| | |||  | |||  ||| |||||||||  | | || || |||||||||||||| ||||||||||||||||    
T  41367157 tggtgttcgaagaggtgcttttgaacttgattcagatggcctatcaactgacatattaatgtcggaaggccaactggatcgagctcataaaaaccttttc 41367256  T
Q  374 agatttagatttgcaacataacgatgaaagacaaggtgtttcaag 418  Q
     ||||||||| || |||||||||||||||||||||||||||||||    
T  41367257 ggatttagatctgaaacataacgatgaaagacaaggtgtttcaag 41367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 21535740 - 21535688
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcacca 159  Q
    |||||| || |||||||||||||||| |||||||||||||||||||| |||||    
T  21535740 tataatccgaaaatgacaaaaacattccggattatataatccgaacaacacca 21535688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 28639691 - 28639557
Alignment:
Q  290 gcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaa 389  Q
    ||||||| ||||| |||||| | | |||||  ||||||||||||||| | ||  |||||||||| || ||||   ||||| ||| || | | || |||||    
T  28639691 gcttttgtacttgatccagctggcttgccagctgacatatttctatttgcaggtcaactggatcaagttcatgcgaacctcttcggaatcaaatctgcaa 28639592  T
Q  390 cataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    ||||| | ||||||||||||||||||||| |||||    
T  28639591 cataatggtgaaagacaaggtgtttcaagaggatt 28639557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 41933160 - 41933080
Alignment:
Q  344 caactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||||||||| || |||||| ||||| ||| |  | | || |||||||||| ||||||||||||||||||||||| |||||    
T  41933160 caactggatcaagttcataagaacctcttcggtatcatatatgcaacataatgatgaaagacaaggtgtttcaagaggatt 41933080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 29914030 - 29914067
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatata 144  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  29914030 tataatccggaaatgacaaaaacattccggattatata 29914067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 9349683 - 9349599
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataagaattcgcaaagat 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||| |||||||    
T  9349683 ttctatactttcaattgcattctccaaagcttcaaatctttcatgtgcaacattagaaccttcacttataagggttctcaaagat 9349599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 9357062 - 9356991
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9357062 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacgttagaaccttcacttataag 9356991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9374184 - 9374118
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9374184 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactt 9374118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9301195 - 9301279
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataagaattcgcaaagat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  ||| |||||||    
T  9301195 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacgttagaaccttcacttgtaagggttctcaaagat 9301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 9287858 - 9287921
Alignment:
Q  26 tttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287858 tttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 9287921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9296980 - 9297051
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 89  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  9296980 ttctatactttcaattgcattctccaaagcctcaaatctatcatgtgcaacaatagaaccttcacttataag 9297051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 9329439 - 9329372
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactta 85  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329439 ttctatactttcaactgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactta 9329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9331612 - 9331682
Alignment:
Q  19 tctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9331612 tctatactttcaattgcattctccaaagcctcaaatccttcatgtgcaacatttgaaccttcacttataag 9331682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9351340 - 9351410
Alignment:
Q  19 tctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataag 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9351340 tctatactttcaattgcattctccaaagcctcaaatccttcatgtgcaacatttgaaccttcacttataag 9351410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 9292373 - 9292439
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9292373 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacaatagaaccatcactt 9292439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 9304813 - 9304879
Alignment:
Q  18 ttctatactttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcactt 84  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  9304813 ttctatactttcaattgcattctcgaaagcctcaaatctttcatgtgcaacattagaatcttcactt 9304879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 9361470 - 9361406
Alignment:
Q  26 tttcaattgcattctccaaagcctcaaatctttcatgtgcaacattagaaccttcacttataaga 90  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  9361470 tttcaattgctttctccaaagcctcaaatcttttttgtgcaacattagaaccttcacttaaaaga 9361406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 27495363 - 27495431
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    |||||| |||||||||||||  |||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  27495363 tataatccggaaatgacaaa--cattccggattatataatccgaacagcgccagaatgcctatttggaggg 27495431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 23247908 - 23247985
Alignment:
Q  322 tgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatg 399  Q
    |||||||||||||| || || | |||||||||||| ||||||||| |||||| |||  |||| |||||||||||||||    
T  23247908 tgacatatttctatcggcaggctaactggatcgagttcataaaaatcttttcggatccagatctgcaacataacgatg 23247985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 9368282 - 9368242
Alignment:
Q  26 tttcaattgcattctccaaagcctcaaatctttcatgtgca 66  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  9368282 tttcaattgcattctccaaagcctcaaatctttcacgtgca 9368242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 9129393 - 9129325
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggag 175  Q
    |||||| || |||||||||||||||  |||||||||||||| |||| |||||| ||||| | |||||||    
T  9129393 tataatccgaaaatgacaaaaacatcccggattatataatctgaactgcaccataatgcatgtttggag 9129325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 17978903 - 17978779
Alignment:
Q  269 tagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaacc 368  Q
    |||| ||||||| ||||| | | ||||||||| | |||||| | |||||||| | | |||| |||||  | | ||||||| ||||||| |||||||||||    
T  17978903 taggatggtgttcgaagaggtgattttgaactcgatccagctggcctgccaactaatatatatctatcagaaaaccaactagatcgagctcataaaaacc 17978804  T
Q  369 ttttcagatttagatttgcaacata 393  Q
    ||||| |||| | || |||||||||    
T  17978803 ttttcggattcaaatatgcaacata 17978779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 17979075 - 17979015
Alignment:
Q  114 cggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttgga 174  Q
    |||| |||| ||||||||| |||||||||||||| |||||  |||| ||||||||||||||    
T  17979075 cggatatgataaaaacattccggattatataatctgaacaaaaccagaatgcctatttgga 17979015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 27495515 - 27495571
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaa 320  Q
    ||||||||| ||||||| ||||| | ||||||||||| | |||||| ||||||||||    
T  27495515 tattataggatggtgttcgaagaggtgcttttgaactcgatccagctgacctgccaa 27495571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 1377744 - 1377869
Alignment:
Q  290 gcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaa 389  Q
    ||||||||||| | || ||| | |||||||| |||||||||||||| || || |||||||||||||| |||||||||||||||| ||||   || |||||    
T  1377744 gcttttgaactcgatctagctggcctgccaactgacatatttctatcggaaggccaactggatcgagctcataaaaaccttttcggattctaatctgcaa 1377843  T
Q  390 cataacgatgaaagacaaggtgtttc 415  Q
    ||||||| ||||||||||||||||||    
T  1377844 cataacgttgaaagacaaggtgtttc 1377869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 264 - 431
Target Start/End: Original strand, 1852518 - 1852689
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | | ||||||||| | || ||| | |||||||| |||||||||| ||| || || |||| | ||||||| ||||||    
T  1852518 tattctaggatggtgttcgaagaggtgtttttgaactcgatctagctggcctgccaactgacatatttatatcggcaggccaagtagatcgagttcataa 1852617  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagaca----aggtgtttcaagcggattatatatt 431  Q
    |||||||||| |||| |||| ||||||||||||||||||||||    ||||||||||||  |||||||||||    
T  1852618 aaaccttttcggattcagatatgcaacataacgatgaaagacaatgtaggtgtttcaagaagattatatatt 1852689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 1852362 - 1852420
Alignment:
Q  117 aaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggag 175  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| |||||||||||||||    
T  1852362 aaatgacaaaaacattccggtttatataatccaaacaacaccagaatgcctatttggag 1852420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 424
Target Start/End: Original strand, 18500731 - 18500862
Alignment:
Q  291 cttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaac 390  Q
    |||||| ||||| |||||| | |||| ||| ||||||||||| || || ||  |||||||||| || |||||  ||||||  | || ||| || ||||||    
T  18500731 cttttgtacttgatccagctggcctgtcaactgacatatttcgatcggcaggtcaactggatcaagttcataggaacctt--cggaattaaatctgcaac 18500828  T
Q  391 ataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||| |||||||| |||||||||||||| |||||    
T  18500829 ataatgatgaaaggcaaggtgtttcaagaggatt 18500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 26188134 - 26188081
Alignment:
Q  125 aaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagggg 178  Q
    |||||||| |||||| ||||||||| ||| ||||| ||||||||||||||||||    
T  26188134 aaaacattccggattgtataatccggacaacaccataatgcctatttggagggg 26188081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 1377561 - 1377621
Alignment:
Q  117 aaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    |||||||||||| ||| | ||||||||||| |||||| || || |||||||||||||||||    
T  1377561 aaatgacaaaaagattccagattatataattcgaacaacatcagaatgcctatttggaggg 1377621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 25138331 - 25138245
Alignment:
Q  343 ccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggattatatatt 431  Q
    |||||||||||||| |||||||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  25138331 ccaactggatcgagttcataaaaaccttttcggattcagatttgcaacataa--atgaaacacaaggtgtttcaagcggattatatatt 25138245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 314 - 424
Target Start/End: Original strand, 28547247 - 28547357
Alignment:
Q  314 ctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtt 413  Q
    ||||||| |||||||||||||| || || |||||||||||||| ||||||||||| |||| || | |||| |||||||||| ||||||||| ||||||||    
T  28547247 ctgccaactgacatatttctatcggaaggccaactggatcgagttcataaaaaccatttcggaatcagatctgcaacataatgatgaaagataaggtgtt 28547346  T
Q  414 tcaagcggatt 424  Q
    ||||| |||||    
T  28547347 tcaagaggatt 28547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 20818893 - 20819035
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||| | ||| |||||| |||||||||||||| || |  | |||||||||||| ||||||    
T  20818893 tattctaggatggtgttcgaagaggtgcttttgaactcgatccaactgacttgccaactgacatatttctatcggcatgcaaactggatcgagttcataa 20818992  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagaca 406  Q
    |||| ||||   ||| |||| ||||||||||||||||||||||    
T  20818993 aaacttttttgaattcagatctgcaacataacgatgaaagaca 20819035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25138578 - 25138508
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    |||||| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  25138578 tataatccgaaaatgacaaaaacattccggattatataatccgaacatcaccataatgcctatttggaggg 25138508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 20818731 - 20818786
Alignment:
Q  122 acaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggg 177  Q
    ||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||    
T  20818731 acaaaaacattccggattatacaatccaaacaacaccaaaatgcctatttggaggg 20818786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 17520257 - 17520334
Alignment:
Q  313 cctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaac 390  Q
    ||||||||  |||||||||| ||||  |||||||||||||| || |||||| ||||| ||| || |||||| ||||||    
T  17520257 cctgccaaccgacatatttcaattgacagaccaactggatcaagttcataagaacctattcggaattagatctgcaac 17520334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 18803 - 18643
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | ||||||||||| | |||||| | | |||||| | |||||||||||| |  |  |||||||||||||  ||||||    
T  18803 tattctaggatggtgttcgaagaggtgcttttgaactcgatccagctggcttgccaactaacatatttctatcgccaagccaactggatcgaattcataa 18704  T
Q  364 aaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||| ||||  |||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  18703 aaacttttttggattcagatatgcaacataacgatgaaagacaaggtgtttcaagaggatt 18643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 18957 - 18846
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggaggggnnnnnnnnagagagatttcatggaaaat 206  Q
    |||||| || ||||||||||||||||  |||||||||||| |||||||||||| |||| |||||| || |||        | ||||||||||||||||||    
T  18957 tataatccgaaaatgacaaaaacattctggattatataattcgaacagcaccagaatgtctatttaga-gggttttttttaaagagatttcatggaaaat 18859  T
Q  207 aagtaatcaatgc 219  Q
    ||||||| |||||    
T  18858 aagtaataaatgc 18846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 11457445 - 11457561
Alignment:
Q  315 tgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgttt 414  Q
    |||||| |||||||||||||| || |   ||||  ||||||| ||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||    
T  11457445 tgccaactgacatatttctatcggcatgtcaacatgatcgagttcataaaaaccttttcagattcaaatatgcaacataacaatgaaagacaaggtgttt 11457544  T
Q  415 caagcggattatatatt 431  Q
    |||||||| ||||||||    
T  11457545 caagcggaatatatatt 11457561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 28284808 - 28284934
Alignment:
Q  264 tattatagggtggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataa 363  Q
    |||| |||| ||||||| ||||| | ||||||||||||| ||| || | |||||||| ||| ||||||| || || || ||||||||||| || ||||||    
T  28284808 tattctaggatggtgttcgaagaggtgcttttgaacttgatcctgcaggcctgccaactgatatatttcgatcggcagcccaactggatcaagttcataa 28284907  T
Q  364 aaaccttttcagatttagatttgcaac 390  Q
    |||||| ||| |  |||||||||||||    
T  28284908 aaacctcttcgggattagatttgcaac 28284934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 31467396 - 31467352
Alignment:
Q  22 atactttcaattgcattctccaaagcctcaaatctttcatgtgca 66  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  31467396 atactttcaattgcattctccaaagcctccaatctttcatgtgca 31467352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 31477242 - 31477200
Alignment:
Q  22 atactttcaattgcattctccaaagcctcaaatctttcatgtg 64  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  31477242 atactttcaattgcattctccaaagcctctaatctttcatgtg 31477200  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 31502606 - 31502562
Alignment:
Q  22 atactttcaattgcattctccaaagcctcaaatctttcatgtgca 66  Q
    |||||||||||| | |||||||||||||| |||||||||||||||    
T  31502606 atactttcaattactttctccaaagcctccaatctttcatgtgca 31502562  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 11457224 - 11457293
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 176  Q
    |||||| |||||||||||||| ||||  ||||||||||||  |||||  |||| ||||||| ||||||||    
T  11457224 tataatccggaaatgacaaaagcattctggattatataatttgaacaataccataatgcctttttggagg 11457293  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 38621318 - 38621202
Alignment:
Q  274 tggtgtttgaagaagagcttttgaacttggtccagccgacctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttc 373  Q
    ||||||| ||||| | ||||||||||||| ||| || | | |||||| ||||||||||| || || |  |||||| |||| || |||||| ||||| |||    
T  38621318 tggtgttcgaagatgtgcttttgaacttgatcctgcaggcatgccaactgacatatttcaatcggcatgccaactagatcaagttcataataacctattc 38621219  T
Q  374 agatttagatttgcaac 390  Q
    ||  |||||| ||||||    
T  38621218 aggattagatctgcaac 38621202  T

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Target: scaffold0160 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 17019 - 16908
Alignment:
Q  313 cctgccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgt 412  Q
    |||||||| |||||||||| |||  | ||  |||||||||| || |||||||||||||||| || | | || |||| |||||||||||||||||||||||    
T  17019 cctgccaaatgacatatttatatccgcaggtcaactggatcaagttcataaaaaccttttcggaatcatatctgcagcataacgatgaaagacaaggtgt 16920  T
Q  413 ttcaagcggatt 424  Q
    |||||| |||||    
T  16919 ttcaagaggatt 16908  T

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Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 424
Target Start/End: Complemental strand, 426947 - 426865
Alignment:
Q  342 accaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    |||| |||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||  ||||||||| ||| |||||    
T  426947 accacctggatcgagttcataaaaaccttttcgaattcagatttgcaacataacgatgaaagggaaggtgtttgaagaggatt 426865  T

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Target: scaffold0210 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 7849 - 7777
Alignment:
Q  352 tcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttcaagcggatt 424  Q
    ||||| |||||||||||||||  |||| |||| |||||| |||||||||||||||| |||||||||| |||||    
T  7849 tcgagttcataaaaacctttttggattcagatatgcaacttaacgatgaaagacaatgtgtttcaagaggatt 7777  T

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Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 52237 - 52345
Alignment:
Q  316 gccaagtgacatatttctattggtagaccaactggatcgaggtcataaaaaccttttcagatttagatttgcaacataacgatgaaagacaaggtgtttc 415  Q
    ||||| ||||||||||| || ||||| ||||||||||| || ||| ||| |||  ||| |||| | || |||||||||||||||||||| || |||||||    
T  52237 gccaactgacatatttcgatcggtaggccaactggatcaagttcaaaaacaccaattcggattcacatctgcaacataacgatgaaagaaaatgtgtttc 52336  T
Q  416 aagcggatt 424  Q
    ||| |||||    
T  52337 aagaggatt 52345  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 39807223 - 39807154
Alignment:
Q  107 tataattcggaaatgacaaaaacatttcggattatataatccgaacagcaccaaaatgcctatttggagg 176  Q
    |||||| | |||||||||||||||||  | ||||||||||||||||| ||| | ||| ||||||||||||    
T  39807223 tataatccagaaatgacaaaaacattctgaattatataatccgaacaacactagaatacctatttggagg 39807154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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