View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7658_low_2 (Length: 326)
Name: NF7658_low_2
Description: NF7658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7658_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 45 - 285
Target Start/End: Complemental strand, 34349530 - 34349290
Alignment:
| Q |
45 |
tctctcaggagacgggtatccagttgatgattgacttgtttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaa |
144 |
Q |
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| T |
34349530 |
tctctcaggagacgggtatccagttgacgattgacttgtttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaa |
34349431 |
T |
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| Q |
145 |
tattcccttcctaaagagaatacgtgaggagcacctcaatatggcaacttagtgggagaatgagggaaataatctgatacagtggtgtgtgagagctttc |
244 |
Q |
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| T |
34349430 |
tattcccttcctaaagagaatacgcgaggagcacctcaatatggcaacttagtgggagaatgagggaaataatccgatacaatggtgtgtgagagctttc |
34349331 |
T |
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| Q |
245 |
ttgctttatttgatttgttttactatattcatcgacaatat |
285 |
Q |
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| T |
34349330 |
ttgctttatttgatttgttttactatattcatcgacaatat |
34349290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 16782302 - 16782424
Alignment:
| Q |
84 |
ttggtgttgtcgagcatactgcgattgatgagagagctaactagtttggtgctttttcaaatattcccttcctaaagagaatacgtgaggagcacctcaa |
183 |
Q |
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| T |
16782302 |
ttggtgttgtcgagcatcgtgcaattgatgagtgtgatcaccagtttggggattttataaatattccactcctaaagggaatatatgacgagcacctcaa |
16782401 |
T |
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| Q |
184 |
tatggcaacttagtgggagaatg |
206 |
Q |
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| T |
16782402 |
tatggaaactcagttggagaatg |
16782424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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