View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7658_low_4 (Length: 271)
Name: NF7658_low_4
Description: NF7658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7658_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 23912999 - 23913261
Alignment:
| Q |
1 |
gcaggggaattaaactgaaaaacatgattaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgc |
100 |
Q |
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| T |
23912999 |
gcaggggaattaaactgaaaaacatgattaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgc |
23913098 |
T |
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| Q |
101 |
tattgctgttgctgctggttgtgccatcagagttatgaatatctaaggggtgttgattaggggaaagaggtttatttgtgtgtaaaagagcatcatagaa |
200 |
Q |
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| T |
23913099 |
tattgctgttgctgctggttgtgccatcagagttatgaatatctaaggggtgttgattaggggaaagaggtttatttgtgtgtaaaagagcatcatagaa |
23913198 |
T |
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| Q |
201 |
tgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctggtcaacatattcttc |
263 |
Q |
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| T |
23913199 |
tgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctggtcaacattttcttc |
23913261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 23904064 - 23903966
Alignment:
| Q |
6 |
ggaattaaactgaaaaacatgattaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgctatt |
104 |
Q |
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| T |
23904064 |
ggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggtttcgactcgtgagaatcgtcgatgctgctgttactatt |
23903966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 23922920 - 23923018
Alignment:
| Q |
6 |
ggaattaaactgaaaaacatgattaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgctatt |
104 |
Q |
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| T |
23922920 |
ggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggtttcgactcgtgagaatcgtcgatgctgctgttactatt |
23923018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 23903930 - 23903852
Alignment:
| Q |
185 |
aaagagcatcatagaatgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctggtcaacatattcttc |
263 |
Q |
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| T |
23903930 |
aaagagcatcatggaatgatttttctgtgatttgtaagctaagtggatcataaaaaggtctctggtcaacgttttcttc |
23903852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 23923054 - 23923132
Alignment:
| Q |
185 |
aaagagcatcatagaatgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctggtcaacatattcttc |
263 |
Q |
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| T |
23923054 |
aaagagcatcatggaatgatttttctgtgatttgtaagctaagtggatcataaaaaggtctctggtcaacgttttcttc |
23923132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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