View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7659_low_1 (Length: 881)
Name: NF7659_low_1
Description: NF7659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7659_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 5 - 588
Target Start/End: Original strand, 1440537 - 1441132
Alignment:
| Q |
5 |
tgtccaataatatatctgtttatttaacatctgtaaataggtgtgtgcgtgtgcgcgggcgcgcacaagaatgcaagtaaacgagtgcttgatttcagca |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1440537 |
tgtccaataatatatttgtttatttaacatctgtaaataggtgtgtgcgtgtgggtgggcgcgcaaaagaatgcaagtaaacgagtgcttggtttcagca |
1440636 |
T |
|
| Q |
105 |
gaatttctctttctttggtctgctactcctggtagtaagattctatttggattttctgtcataacttacacaggc------------aacggtgctctat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||| |
|
|
| T |
1440637 |
gaatttctctttctttggtctgctactcccggtagtaagattctatttggattttctgtcgtaccttaaacaggctgctccaaaaggaacggtgctctat |
1440736 |
T |
|
| Q |
193 |
tacaaagacagcaaaggaatcatctattgagtaatccctttgtgtcaacactcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1440737 |
tacaaagacagcaaaggaatcatctattgagtaatccctctgtgtcaacactcaacacgacctgaattttaacaatgacaaatactagaaggagtgcatt |
1440836 |
T |
|
| Q |
293 |
taagaggcgaacatgatgcgaggggaacaattgaagggtaacactctattagatgatggtatgtttaaagatagcgattggtttaaccaaatataattga |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1440837 |
taagaggcgaacatgatgcgaggggaacaattgaagggtaacactctattagatgatcgtatgtttaaagacagtgattggtttaaccaaatataattga |
1440936 |
T |
|
| Q |
393 |
ctaccagcatgtcttgtgtgacatatggattgaggacttgattctaagtacaacataggaactacaattgagagcatggatcgccacaatttggttctgt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1440937 |
ctaccagcatgtcttgtgtgacatatggattgaggacttgattctaagtacaacgtaggaactacaattgagagcatggatcgccacaatttggttctgt |
1441036 |
T |
|
| Q |
493 |
gctcaaaggatatggagcagtttgcacaaagtcttttgtgaacaagaataatgacaaaggaaaagacacagaagaaaggcaaagctaaaatgaaaa |
588 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
1441037 |
gctcaaaggatatgaagcagtttgcacaaagtcttttgtgaacaagaataatgacaaaggaaaagacacagaagaaaggcatagctaaaataaaaa |
1441132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 813 - 865
Target Start/End: Original strand, 1441286 - 1441338
Alignment:
| Q |
813 |
tatttcatgttattatgtgatgagtccttgcgcttcataagcaagataaatat |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1441286 |
tatttcatgttattatgtgatgagtccttgcgcttcataagcaagataaatat |
1441338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 1453161 - 1453268
Alignment:
| Q |
244 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
341 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||||| |||||| |||| ||| ||| | |||| ||||||||||||||| | | |||||| | | |
|
|
| T |
1453161 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1453260 |
T |
|
| Q |
342 |
tagatgat |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
1453261 |
tagatgat |
1453268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 1464853 - 1464960
Alignment:
| Q |
244 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
341 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||||| |||||| |||| ||| ||| | |||| ||||||||||||||| | | |||||| | | |
|
|
| T |
1464853 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1464952 |
T |
|
| Q |
342 |
tagatgat |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
1464953 |
tagatgat |
1464960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 521 - 589
Target Start/End: Original strand, 41705324 - 41705392
Alignment:
| Q |
521 |
aagtcttttgtgaacaagaataatgacaaaggaaaagacacagaagaaaggcaaagctaaaatgaaaac |
589 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||| || |||| ||||||| ||||||||||||||| |
|
|
| T |
41705324 |
aagtcttttgtgaacaagtatagtgacagaggaaaaggcaaagaaaaaaggcatagctaaaatgaaaac |
41705392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 41705258 - 41705298
Alignment:
| Q |
468 |
atggatcgccacaatttggttctgtgctcaaaggatatgga |
508 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41705258 |
atggatcgccacagtttggttctgtgctcaaaggatatgga |
41705298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 41704446 - 41704491
Alignment:
| Q |
88 |
agtgcttgatttcagcagaatttctctttctttggtctgctactcc |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||| |||| |
|
|
| T |
41704446 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctcc |
41704491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University