View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7659_low_2 (Length: 539)
Name: NF7659_low_2
Description: NF7659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7659_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 42954817 - 42955341
Alignment:
| Q |
1 |
tgaaagaaaaaccaataacgatttgcctccactctaaatagtaaatatatgtcatgacatgaagttggcaacaagaaatgaaaatatgagtgatgacttc |
100 |
Q |
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| T |
42954817 |
tgaaagaaaaaccaataacgattttcctccactctaaatagtaaatatatgtcatgacatgaagttggcaacaagaaatgaaaatatgagtgatgacttc |
42954916 |
T |
|
| Q |
101 |
atgagactgaagggtgttctaccaaatttgaattataagggtgaatttctgtccaatacaattatacaacaatgtccatttttaactgttatgagcacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42954917 |
atgagactgaagggtgttctaccaaatttgaattataagggtgaatt---gtccaatacaattatacaacaatgtccatttttaattgttatgagcacaa |
42955013 |
T |
|
| Q |
201 |
cttttactcaataa-gggtgaaaagatttgtgccacctcttttcccctgaagaggtccttttaagtttgaagcatatcttgtgttaatttcatgtcaaag |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42955014 |
cttttactcaataaagggtgaaaagatttgtgccacctcttttcccctgaagaggtccttttaagtttgaagcatatcttgtgttaatttcatgtcaaag |
42955113 |
T |
|
| Q |
300 |
gattcgtttagaaatatggcagctgccccatcattctcatcttttcaccacatctaaacttgttatgtatttctctttccttttgaacaataagagatca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42955114 |
gattcgtttagaaatatggcagctgccccatcattctcatcttttcaccacatctaaacttgttatgtatttctctttccttttgaacaataagagatca |
42955213 |
T |
|
| Q |
400 |
cattttaccctcacgtgaaaattacgtattagagaatacataccagttgtgcatgtctatatttgttcgatatactctttgttatcgttgaagtttatac |
499 |
Q |
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| T |
42955214 |
cattttaccctcacgtgaaaattacgtattagagaatacataccagttgtgcatgtctatatttgttcgatatactctttgttatcgttgaagtttatac |
42955313 |
T |
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| Q |
500 |
aaaacccattaaatcacgagtacctcat |
527 |
Q |
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| T |
42955314 |
aaaacccattaaatcatgagtacctcat |
42955341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 52737898 - 52737945
Alignment:
| Q |
277 |
cttgtgttaatttcatgtcaaaggattcgtttagaaatatggcagctg |
324 |
Q |
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|||| |||||||||| |||||||||||||||| |||||||||||||| |
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| T |
52737898 |
cttgcgttaatttcaggtcaaaggattcgtttttaaatatggcagctg |
52737945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 40632512 - 40632471
Alignment:
| Q |
277 |
cttgtgttaatttcatgtcaaaggattcgtttagaaatatgg |
318 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
40632512 |
cttgtgttgatttcatgtcaaaggaatcgtttataaatatgg |
40632471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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