View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7659_low_3 (Length: 323)
Name: NF7659_low_3
Description: NF7659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7659_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 32141727 - 32141400
Alignment:
| Q |
1 |
gtgtcgttagtccatatatttgtataaagtctatgacatctaagatat----caaatctatacctt-gaatattttaatcggactagactaatatcttac |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32141727 |
gtgtcgttagtccatatatttgtataaagtctatgacatctaagatatatatcaaatctatacctttgaatattttaatcggactagactaatatcttac |
32141628 |
T |
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| Q |
96 |
taagtatagtttgatgagcatattctcactactattcttcaaggaaatcaaagtataggttcgcacataatctgaatacgtactccatttgatatttctg |
195 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32141627 |
taagtatcgtttgatgagcatattctcactactattcttcaaggaaatcaaagtataggttcgcacataatctgaatacgtactccatttgatatttctg |
32141528 |
T |
|
| Q |
196 |
ttcacaaagccataagcaactatataaatataactctagcataaaacaaaatgtttttatattctgttcgctaagcatgttagtagtaaccaattatcag |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32141527 |
ctcacaaagccataagcaactatataaatataactctagcataaaacaaaatgtttttatattctgttcgctaagcatgttagtagtaaccaattatcag |
32141428 |
T |
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| Q |
296 |
aatgtttgccattttttaaaaaagacca |
323 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32141427 |
aatgtttgccattttttaaaaaagacca |
32141400 |
T |
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