View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_high_1 (Length: 876)
Name: NF7660_high_1
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 45705258 - 45705710
Alignment:
| Q |
1 |
tcttctgtcgaattacgtgaattctcaaacggaaggcggtgcggaaggaaaagagtcttgctcaacggcgtcgccggtgaagacgcttcgtttgttaccg |
100 |
Q |
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| T |
45705258 |
tcttctgtcgaattacgtgaattctcaaacggaaggcggtgcggaaggaaaagagtcttgctcaacggcgtcgccggtgaagacgcttcgtttgttaccg |
45705357 |
T |
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| Q |
101 |
gagaagcggtgcaacggcgaagatgcggcggtggaagatagaaacccgaagctgtttgaaatagcgattgatgcgaagcgagagagagaaggacggtgta |
200 |
Q |
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| T |
45705358 |
gagaagcggtgcaacggcgaagatgcagcggtggaagatagaaacccgaagctgtttggaatagcgattgatgcgaagcgagagagagaaggacggtgta |
45705457 |
T |
|
| Q |
201 |
ttgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagagccgtttgattcaaggaagggtgaaaagaggaaaatgatgcg |
300 |
Q |
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| T |
45705458 |
ttgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagagccgtttgattcaaggaagggtgaaaagaggaaaatgatgcg |
45705557 |
T |
|
| Q |
301 |
gctaaatcagtgctatagagcaaatcagagtgtttgcaattgacatacgaagttgta--------ggaacacgttaggctaagttaggggtagtggatga |
392 |
Q |
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| T |
45705558 |
gctaaatcagtgctatagagcaaatcagagtgtttgcaattgacatacgaagttgtatcagatagggaaaacgttaggctaagtaaggggtagtggatga |
45705657 |
T |
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| Q |
393 |
cgtacacacgattggaactggtttaccagaagcttctcagaagataacgatac |
445 |
Q |
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| T |
45705658 |
cgtacacacgattggaactggtttaccagaagcttctcagaagataacgatac |
45705710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 765 - 831
Target Start/End: Original strand, 45706018 - 45706084
Alignment:
| Q |
765 |
gtcttccgaaaaaattattaacatagcagaatagaaacggttccattgaaaatgtacctaagtttta |
831 |
Q |
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| T |
45706018 |
gtcttccgaaaaaattatcaacatagcagaatagaaacggttccattgaaaatgtacccaagtttta |
45706084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 43557936 - 43557878
Alignment:
| Q |
201 |
ttgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagag |
259 |
Q |
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| T |
43557936 |
ttgaggatgatgtggtgttgagcctgaatcaaccggttcaagtggacgtgaaatcagag |
43557878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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