View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_high_15 (Length: 414)
Name: NF7660_high_15
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_15 |
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| [»] scaffold1084 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 39875922 - 39876306
Alignment:
| Q |
17 |
caagtgacctatattttttagaacttggtgttgctatcatcctatgtgtattttgtgtctcgtttctgtatctgtcagatttacaagataaaatgcatac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39875922 |
caagtgacctatattttttagaacttggtgttgctatcatcttatgtttattttgtgtctcgtttctgtatctgtcagatttacaagataaaatgcatac |
39876021 |
T |
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| Q |
117 |
ggctaaaaataagtggtgtataacaactggacggactcgtcaagatttatttcgacttctgaaaatggttaaacatagggaaaatcactacactaaccca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39876022 |
ggctaaaaataagtggtgtataacaactggacggactcgtcaagatttatttcgacttctgaaaatggttaaacatagggaaaatcactacactaaccca |
39876121 |
T |
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| Q |
217 |
aacagaaaactaattcactggaaaaatatcacttactatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39876122 |
aacagaaaactaattcactggaaaaatatcacttactatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacat |
39876221 |
T |
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| Q |
317 |
cagttcggtaattattcaaattccacaacttcccatcgtgcctctggtgtgtcccccagaaaggattttgttttagaacttgatatt |
403 |
Q |
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| T |
39876222 |
cagttcggtaattattcaaattccacaacttcccatcgtgcctctggtgtgtcccccagaaagga--ttgttttagaacttgatatt |
39876306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 208 - 403
Target Start/End: Original strand, 44779343 - 44779538
Alignment:
| Q |
208 |
actaacccaaacagaaaactaattcactggaaaaatatcacttactatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggctt |
307 |
Q |
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| T |
44779343 |
actaacccaaccagaagactaattcaacggaaaaatatcacttactatgttcctttgaataatgtgtgttcaagaattccttcaactcccccaagggctt |
44779442 |
T |
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| Q |
308 |
gaataacatcagttcggtaattattcaaattccacaacttcccatcgtgcctctggtgtgtcccccagaaaggattttgttttagaacttgatatt |
403 |
Q |
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| T |
44779443 |
gaataacatcagttcggtaattattcaagttccacaacttcccatcgtgcctctggtgtgtccaccagaagggattttgttttagaacttgatatt |
44779538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 44779191 - 44779342
Alignment:
| Q |
17 |
caagtgacctatattttttagaacttggtgttgctatcatcctatgtgtattttgtgtctcgtttctgtatctgtcagatttacaagataaaatgcatac |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
44779191 |
caagtgaccaatattttttagaacttggtgttgctatcattctatgtgtattttgtgtctcgttaccgtgtctgtcagatttacaagataaaatgcatac |
44779290 |
T |
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| Q |
117 |
ggctaaaaataagtggtgtataacaactggacggactcgtcaagatttattt |
168 |
Q |
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| T |
44779291 |
agctaaaaataagtggtgtataacaacttgatagactcgtcaagattcattt |
44779342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 253 - 401
Target Start/End: Complemental strand, 2899437 - 2899289
Alignment:
| Q |
253 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacatcagttcggtaattattcaaattccacaacttcccat |
352 |
Q |
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| T |
2899437 |
tatgttcctttgaataaagtgtgttcaagaatttgttcaattcctccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
2899338 |
T |
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| Q |
353 |
cgtgcctctggtgtgtcccccagaaaggattttgttttagaacttgata |
401 |
Q |
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| T |
2899337 |
catgcctctggtgtgtccaccagaagggattttgttttaaaacttgata |
2899289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 2717 - 2658
Alignment:
| Q |
276 |
ttcaagaattccttcaactcctccaagggcttgaataacatcagttcggtaattattcaa |
335 |
Q |
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| T |
2717 |
ttcaagaattccttcaacacctccaagggcttgaataacatcagttctgtaattgttcaa |
2658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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