View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_high_18 (Length: 362)
Name: NF7660_high_18
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1293726 - 1294067
Alignment:
| Q |
1 |
tgagatccttaataattagattaagtgatcaattgagagagttaaagggacaaaacaacatgtcaaaatacttaagaggcatttaataactattctgatt |
100 |
Q |
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| T |
1293726 |
tgagatccttaataattagattaagtgatcaattgagagagttaaagggacaaaacaacatgtcaaaatacttaagaggcatttaataactactctgatt |
1293825 |
T |
|
| Q |
101 |
ttaaaaaggctttcttgcaattcaagtttgtttttcttataaatatagcatgaggtcttttatattatatagtgataaaatagtttgttgtacgttacat |
200 |
Q |
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| T |
1293826 |
ttaaaaaggctttcttgcaattcaagtttgtttttcttataaatatagcatgaggtcttttatattatatagtgataaaatagtttgttgtacgttacat |
1293925 |
T |
|
| Q |
201 |
gcnnnnnnnnnnnnnnnntgattaaaattatcaagtttgtgtatgctatgaccttcttgattttcctatttctttttataactgacactggtaaaccttc |
300 |
Q |
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| T |
1293926 |
gcaaaaaaaggaaaaaaatgattaaaattatcaagtttgtgtatgctatgaccttcttgattttcctatttctttttataactgacactggtaaactttc |
1294025 |
T |
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| Q |
301 |
tcttctcttcattttc-aagtttattttaattttgaccttat |
341 |
Q |
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| T |
1294026 |
tcttcttttcattttcaaagtttcttttaattttgaccttat |
1294067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 1285877 - 1285961
Alignment:
| Q |
39 |
gagttaaagggacaaaacaacatgtcaaaatacttaagaggcatttaataactattctgattttaaaaaggctttcttgcaattc |
123 |
Q |
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||||||||||||||||||||||| ||||||||||| || | ||||| ||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
1285877 |
gagttaaagggacaaaacaacatatcaaaatacttgagggacatttgataacgattctaatttttaaaaggttttcttgcaattc |
1285961 |
T |
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