View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7660_high_3 (Length: 767)

Name: NF7660_high_3
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7660_high_3
NF7660_high_3
[»] chr6 (1 HSPs)
chr6 (18-755)||(70935-71672)
[»] chr4 (2 HSPs)
chr4 (598-722)||(32419312-32419436)
chr4 (598-722)||(32425590-32425714)
[»] chr7 (1 HSPs)
chr7 (598-755)||(40596296-40596453)


Alignment Details
Target: chr6 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Complemental strand, 71672 - 70935
Alignment:
Q  18 aagtttaacttcattggtagaaaagctgaaacataacataacccttcctgcatctaaggccagctaataacacattgtgcatcacttcactatgcagatc 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  71672 aagtttaacttcattggtagaaaagctgaaacatgacataacccttcctgcatctaaggccagctaataacacattgtgaatcacttcactatgcagatc 71573  T
Q  118 tttataacagaagcagctccaatacgatgaagagcaacaactgcgtcaccaggtttacaaagccccttttgcgttgctgacttaagagaagcctccagaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  71572 tttataacagaagcagctccaatacgatgaagagcaacaactgcgtcaccaggtttacaaagccccttttgcgttgctgacttaagggaagcctccagaa 71473  T
Q  218 ttgcatctgtagattctgcatcagtagctcttgctgatccttctgccaatataggaatcaagcctctgtatattaagctgtgccttgctggtgcctcatc 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  71472 ttgcatctgtagattctgcatcagtagctcttgcagatccttctgccaatataggaatcaagcctctgtatattaagctgtgtcttgctggtgcctcatc 71373  T
Q  318 actgcaggtccaatcaaatgagtctgtggtcaaaaccggaactaccacagacaagattggaacagctggcctatacttagcaactaacttggctgtactc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71372 actgcaggtccaatcaaatgagtctgtggtcaaaaccggaactaccacagacaagattggaacagctggcctatacttagcaactaacttggctgtactc 71273  T
Q  418 ccacctcgtgtcagcacaacaatgagtttcgctctggccttattggctgtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71272 ccacctcgtgtcagcacaacaatgagtttcgctctggccttattggctgtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggag 71173  T
Q  518 tagaccttatcatctctttgaagatagcaccatagtcaagggatgattcagcttcgatacaaatgcgggccatgattttcacagcaagttcagggtaagc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  71172 tagaccttatcatctctttgaagatagcaccatagtcaagggatgattcagcttcaatacaaatgcgggccatgattttcacagcaagttcagggtaagc 71073  T
Q  618 tccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctcgggttggccggggagatttg 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71072 tccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctcgggttggccggggagatttg 70973  T
Q  718 atcatggattcaagcatctgagtagcagtcaccacagg 755  Q
    ||||||||||||||||||||||||||||||||||||||    
T  70972 atcatggattcaagcatctgagtagcagtcaccacagg 70935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 598 - 722
Target Start/End: Original strand, 32419312 - 32419436
Alignment:
Q  598 acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc 697  Q
    ||||| ||||| || ||||||||||||||| ||||||||||||||||||| || || |||||||| ||||||||||| || |||||||| ||||||||||    
T  32419312 acagcgagttctggataagctccagcagcagtttcaccactaagcatgacacagtctgttccatccagaactgcatttgcaacatcagtagcttcagctc 32419411  T
Q  698 gggttggccggggagatttgatcat 722  Q
     ||||||||||||||||||||||||    
T  32419412 tggttggccggggagatttgatcat 32419436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 598 - 722
Target Start/End: Original strand, 32425590 - 32425714
Alignment:
Q  598 acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc 697  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||    
T  32425590 acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc 32425689  T
Q  698 gggttggccggggagatttgatcat 722  Q
     ||||||||  || |||||||||||    
T  32425690 tggttggcctaggtgatttgatcat 32425714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 598 - 755
Target Start/End: Original strand, 40596296 - 40596453
Alignment:
Q  598 acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc 697  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||||||| || || || || || |||||||||||||| ||||| || ||||||||||    
T  40596296 acagcaagttctggataagctccagcagcagtttcaccgctaagcatgacacagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctc 40596395  T
Q  698 gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacagg 755  Q
     |||||||| ||||||||||||||| || || | |||||| || ||||| || |||||    
T  40596396 tggttggcctgggagatttgatcattgactccaacatctgggttgcagtaacaacagg 40596453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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