View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7660_high_30 (Length: 240)

Name: NF7660_high_30
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7660_high_30
NF7660_high_30
[»] chr2 (3 HSPs)
chr2 (1-225)||(15394615-15394840)
chr2 (167-221)||(15386474-15386529)
chr2 (41-104)||(30523234-30523296)
[»] chr8 (1 HSPs)
chr8 (41-101)||(28169864-28169924)
[»] chr4 (4 HSPs)
chr4 (41-105)||(42649470-42649534)
chr4 (41-108)||(46176498-46176565)
chr4 (62-108)||(48417627-48417673)
chr4 (41-105)||(27938815-27938879)
[»] chr5 (3 HSPs)
chr5 (41-94)||(32824649-32824702)
chr5 (41-108)||(5772747-5772814)
chr5 (41-108)||(9096306-9096373)
[»] chr3 (2 HSPs)
chr3 (41-108)||(24588310-24588377)
chr3 (41-118)||(41677474-41677551)
[»] chr7 (2 HSPs)
chr7 (41-107)||(7181749-7181815)
chr7 (41-102)||(23419496-23419557)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15394615 - 15394840
Alignment:
Q  1 ttagggtctgtttgggagtttgaggagttcannnnnnnn-ccttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggat 99  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15394615 ttagggtctgtttgggagtttgaggagttcatttttttttccttcataatacagaatccctctaatttggaggaattcaaaaaatgtattcgaggaggat 15394714  T
Q  100 tttggagggcctagataaaattttccttgctacacaattgcttatgtcataagacgcactcaaatacattgtaaataagttatttcatatgttggtaaca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15394715 tttggagggcctagataaaattttccttgctacacaattgcttatgtcataagacgcactcaaatacattgtaaataagttatttcatatgttggtaacg 15394814  T
Q  200 aagtttaaccaagcctacatctatgg 225  Q
    ||||||||||||||||||||||||||    
T  15394815 aagtttaaccaagcctacatctatgg 15394840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 15386474 - 15386529
Alignment:
Q  167 attgtaaataagttatttcatatg-ttggtaacaaagtttaaccaagcctacatct 221  Q
    |||||||||||||||||||||||| || ||||  |||||||||||||| |||||||    
T  15386474 attgtaaataagttatttcatatgttttgtaattaagtttaaccaagcttacatct 15386529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 30523234 - 30523296
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttgg 104  Q
    |||||||||||| ||||| |||||||||| |||| | ||||| |||||| ||||||||||||||    
T  30523234 cttcataatacaaaatccttctaatttgg-ggaactaaaaaattgtattggaggaggattttgg 30523296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 28169864 - 28169924
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattt 101  Q
    |||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||||||||    
T  28169864 cttcataatacaaaatccttctaatttgggggaactcaaaaaatgtattggaggaggattt 28169924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 42649470 - 42649534
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttgga 105  Q
    |||||| ||||| |||||||||| ||||| |||| ||||||||||| || |||||||||||||||    
T  42649470 cttcattatacaaaatccctctattttgggggaactcaaaaaatgtgttggaggaggattttgga 42649534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 46176498 - 46176565
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggaggg 108  Q
    |||||||||||| ||||||  |||||||||||||   ||||| |||||| |||||||| |||||||||    
T  46176498 cttcataatacaaaatccccttaatttggaggaacgaaaaaattgtattggaggaggagtttggaggg 46176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 48417673 - 48417627
Alignment:
Q  62 taatttggaggaattcaaaaaatgtatttgaggaggattttggaggg 108  Q
    |||||||| |||| ||||||| |||||| ||||||||||||||||||    
T  48417673 taatttgggggaactcaaaaattgtattggaggaggattttggaggg 48417627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 27938879 - 27938815
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttgga 105  Q
    ||||||||||||||||| | || | |||| |||| | | |||||||||| |||||||||||||||    
T  27938879 cttcataatacagaatctccctcaattgggggaactaacaaaatgtattggaggaggattttgga 27938815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 32824649 - 32824702
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgagg 94  Q
    |||||||||||| ||||||  ||||||||||||| ||||||| |||||||||||    
T  32824649 cttcataatacaaaatcccattaatttggaggaactcaaaaattgtatttgagg 32824702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 5772814 - 5772747
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggaggg 108  Q
    |||||||||||| || ||  || ||||||||||||| ||||| |||||| ||||||| ||||||||||    
T  5772814 cttcataatacaaaaccctcctcatttggaggaattaaaaaattgtattggaggagggttttggaggg 5772747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 9096306 - 9096373
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggaggg 108  Q
    |||||||||||| ||||   ||||||||| |||| |||| || |||||| ||||||||||||||||||    
T  9096306 cttcataatacaaaatcttcctaatttgggggaactcaacaattgtattggaggaggattttggaggg 9096373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 24588377 - 24588310
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggaggg 108  Q
    |||||||||||| |||||| || ||||||||||| ||||||| |||||| | ||| | ||||||||||    
T  24588377 cttcataatacaaaatccccctcatttggaggaactcaaaaattgtattgggggatggttttggaggg 24588310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 41677551 - 41677474
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggagggcctagataaa 118  Q
    ||||||||  || |||||| ||||||||| |||| ||||||||||||||   ||||| | ||||||||| ||||||||    
T  41677551 cttcataagccaaaatccccctaatttgggggaactcaaaaaatgtattgagggagggtcttggagggcttagataaa 41677474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 7181749 - 7181815
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaatgtatttgaggaggattttggagg 107  Q
    |||||||||||| ||| |||||||||||| |||| ||||||| || ||| ||| || ||||||||||    
T  7181749 cttcataatacaaaattcctctaatttgggggaactcaaaaattgcattggagcagtattttggagg 7181815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 23419557 - 23419496
Alignment:
Q  41 cttcataatacagaatccctctaatttggaggaattcaaaaaat-gtatttgaggaggatttt 102  Q
    |||||||||||| |||||| ||||||||| |||| | ||||||| ||||||||||||||||||    
T  23419557 cttcataatacacaatccccctaatttgg-ggaactaaaaaaattgtatttgaggaggatttt 23419496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University