View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_high_35 (Length: 239)
Name: NF7660_high_35
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13023724 - 13023500
Alignment:
| Q |
1 |
gtccatatagaaaaattctactaacctgaaaagccgtaaacttgaaagggcattctggctgaaaaattccattttcatcaagccatctttcaggtctaaa |
100 |
Q |
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| T |
13023724 |
gtccatatagaaaaattctactaacctgaaaagccgtaaacttgaaagggcattctggctgaaaaattccattttcatcaagccatctttcaggtctaaa |
13023625 |
T |
|
| Q |
101 |
ttcctctgcatcatcaccccatatgaatttcatcctccccattgcataaggttggtatgacaccatgtctccnnnnnnnacactatatccatctggtaat |
200 |
Q |
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| T |
13023624 |
ttcctctgcatcatcaccccatatgaatttcatcctccccattgcataaggttggtatgacaccatgtctcctttttttacactatatccatctggtaat |
13023525 |
T |
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| Q |
201 |
gtgtcatcagcaaagcaaatttttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
13023524 |
gtgtcatcagcaaagcaaatttttg |
13023500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 13070203 - 13070422
Alignment:
| Q |
6 |
tatagaaaaattctactaacctgaaaagccgtaaacttgaaagggcattctggctgaaaaattccattttcatcaagccatctttcaggtctaaattcct |
105 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| | ||||||||||| ||||||||| ||||||||||||||| |
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| T |
13070203 |
tatagaaaaattctactaacctgaaaagcagtaaacttgaaagggttctctgcctgaaaattgccattttcatccagccatcttgcaggtctaaattcct |
13070302 |
T |
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| Q |
106 |
ctgcatcatcaccccatatgaatttcatcctccccattgcataaggttggtatgacaccatgtctccnnnnnnnacactatatccatctggtaatgtgtc |
205 |
Q |
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| T |
13070303 |
ctgcatcatcaccccatatgaatttcatcctccccattgcataaggttggtatgacaccatgtctcctttttttacactatatccatctggtaatgtgtc |
13070402 |
T |
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| Q |
206 |
atcagcaaagcaaatttttg |
225 |
Q |
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| T |
13070403 |
atcagcaaagcaaatttttg |
13070422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 46160293 - 46160175
Alignment:
| Q |
24 |
acctgaaaagccgtaaacttgaaagggcattctggctgaaaaattccattttcatcaagccatctttcaggtctaaattcctctgcatcatcaccccata |
123 |
Q |
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|||||||| || || ||||| ||||||| |||| ||||||| |||||||||||||||||||||| || ||||| |||| ||| ||||| |||||||| | |
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| T |
46160293 |
acctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccaca |
46160194 |
T |
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| Q |
124 |
tgaatttcatcctccccat |
142 |
Q |
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||| | |||||| ||||| |
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| T |
46160193 |
agaactccatccttcccat |
46160175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 46167119 - 46167019
Alignment:
| Q |
60 |
tgaaaaattccattttcatcaagccatctttcaggtctaaattcctctgcatcatcaccccatatgaatttcatcctccccattgcataaggttggtatg |
159 |
Q |
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|||||| |||||||||||||||||||||| || ||||| |||| ||| ||||| |||||||| | ||| |||||||| ||||| |||| |||||| ||| |
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| T |
46167119 |
tgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccacaagaacttcatccttcccatgacatatggttggaatg |
46167020 |
T |
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| Q |
160 |
a |
160 |
Q |
| |
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| |
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|
| T |
46167019 |
a |
46167019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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