View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7660_high_38 (Length: 211)

Name: NF7660_high_38
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7660_high_38
NF7660_high_38
[»] chr2 (8 HSPs)
chr2 (1-76)||(5852290-5852365)
chr2 (157-211)||(5852446-5852500)
chr2 (183-211)||(1040512-1040540)
chr2 (183-211)||(11126461-11126489)
chr2 (183-211)||(35203794-35203822)
chr2 (183-211)||(35334518-35334546)
chr2 (183-211)||(40874306-40874334)
chr2 (183-211)||(45202166-45202194)
[»] scaffold0148 (1 HSPs)
scaffold0148 (183-211)||(21490-21518)
[»] scaffold0020 (1 HSPs)
scaffold0020 (183-211)||(155904-155932)
[»] chr8 (8 HSPs)
chr8 (183-211)||(14548868-14548896)
chr8 (183-211)||(20473777-20473805)
chr8 (183-211)||(21649213-21649241)
chr8 (183-211)||(22767130-22767158)
chr8 (183-211)||(22960462-22960490)
chr8 (183-211)||(25830291-25830319)
chr8 (183-211)||(31806297-31806325)
chr8 (183-211)||(36675334-36675362)
[»] chr7 (4 HSPs)
chr7 (183-211)||(6353723-6353751)
chr7 (183-211)||(11789736-11789764)
chr7 (183-211)||(29763828-29763856)
chr7 (183-211)||(33212040-33212068)
[»] chr6 (8 HSPs)
chr6 (183-211)||(6997595-6997623)
chr6 (183-211)||(25554243-25554271)
chr6 (183-211)||(25995440-25995468)
chr6 (183-211)||(26094903-26094931)
chr6 (183-211)||(27102113-27102141)
chr6 (183-211)||(27143935-27143963)
chr6 (183-211)||(28883793-28883821)
chr6 (183-211)||(31368653-31368681)
[»] chr5 (2 HSPs)
chr5 (183-211)||(31708368-31708396)
chr5 (183-211)||(38387608-38387636)
[»] chr4 (8 HSPs)
chr4 (183-211)||(3968883-3968911)
chr4 (183-211)||(8810569-8810597)
chr4 (183-211)||(23220333-23220361)
chr4 (179-211)||(24088609-24088641)
chr4 (183-211)||(28527854-28527882)
chr4 (183-211)||(28821329-28821357)
chr4 (183-211)||(39010182-39010210)
chr4 (183-211)||(51224883-51224911)
[»] chr3 (7 HSPs)
chr3 (183-211)||(25559702-25559730)
chr3 (183-211)||(28300284-28300312)
chr3 (183-211)||(29573401-29573429)
chr3 (183-211)||(32722190-32722218)
chr3 (183-211)||(47141645-47141673)
chr3 (183-211)||(47484288-47484316)
chr3 (183-211)||(48944755-48944783)
[»] chr1 (4 HSPs)
chr1 (183-211)||(3919298-3919326)
chr1 (183-211)||(31847230-31847258)
chr1 (183-211)||(49621361-49621389)
chr1 (183-211)||(51250320-51250348)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5852290 - 5852365
Alignment:
Q  1 ccttttatttggttgttggtccggtgaaataacgtcaaatagttaaagtagagatgtcatttgtccacatcaaggg 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5852290 ccttttatttggttgttggtccggtgaaataacgtcaaatagttaaagtagagatgtcatttgtccacaacaaggg 5852365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 5852446 - 5852500
Alignment:
Q  157 aggcaataagaccaccatgtattagcttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5852446 aggcaataagaccaccatgtattagcttgagaaatgatatttgtacaaccatttt 5852500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 1040512 - 1040540
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  1040512 ttgagaaatgatatttgtacaaccatttt 1040540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 11126461 - 11126489
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  11126461 ttgagaaatgatatttgtacaaccatttt 11126489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 35203822 - 35203794
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  35203822 ttgagaaatgatatttgtacaaccatttt 35203794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 35334518 - 35334546
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  35334518 ttgagaaatgatatttgtacaaccatttt 35334546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 40874334 - 40874306
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  40874334 ttgagaaatgatatttgtacaaccatttt 40874306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 45202194 - 45202166
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  45202194 ttgagaaatgatatttgtacaaccatttt 45202166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 21518 - 21490
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  21518 ttgagaaatgatatttgtacaaccatttt 21490  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 155904 - 155932
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  155904 ttgagaaatgatatttgtacaaccatttt 155932  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 14548896 - 14548868
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  14548896 ttgagaaatgatatttgtacaaccatttt 14548868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 20473777 - 20473805
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  20473777 ttgagaaatgatatttgtacaaccatttt 20473805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 21649241 - 21649213
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  21649241 ttgagaaatgatatttgtacaaccatttt 21649213  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 22767130 - 22767158
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  22767130 ttgagaaatgatatttgtacaaccatttt 22767158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 22960490 - 22960462
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  22960490 ttgagaaatgatatttgtacaaccatttt 22960462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 25830319 - 25830291
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  25830319 ttgagaaatgatatttgtacaaccatttt 25830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 31806297 - 31806325
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  31806297 ttgagaaatgatatttgtacaaccatttt 31806325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 36675334 - 36675362
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  36675334 ttgagaaatgatatttgtacaaccatttt 36675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 6353723 - 6353751
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  6353723 ttgagaaatgatatttgtacaaccatttt 6353751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 11789764 - 11789736
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  11789764 ttgagaaatgatatttgtacaaccatttt 11789736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 29763828 - 29763856
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  29763828 ttgagaaatgatatttgtacaaccatttt 29763856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 33212040 - 33212068
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  33212040 ttgagaaatgatatttgtacaaccatttt 33212068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 6997623 - 6997595
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  6997623 ttgagaaatgatatttgtacaaccatttt 6997595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 25554243 - 25554271
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  25554243 ttgagaaatgatatttgtacaaccatttt 25554271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 25995440 - 25995468
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  25995440 ttgagaaatgatatttgtacaaccatttt 25995468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 26094903 - 26094931
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  26094903 ttgagaaatgatatttgtacaaccatttt 26094931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 27102113 - 27102141
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  27102113 ttgagaaatgatatttgtacaaccatttt 27102141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 27143935 - 27143963
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  27143935 ttgagaaatgatatttgtacaaccatttt 27143963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 28883821 - 28883793
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  28883821 ttgagaaatgatatttgtacaaccatttt 28883793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 31368681 - 31368653
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  31368681 ttgagaaatgatatttgtacaaccatttt 31368653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 31708368 - 31708396
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  31708368 ttgagaaatgatatttgtacaaccatttt 31708396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 38387608 - 38387636
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  38387608 ttgagaaatgatatttgtacaaccatttt 38387636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 3968883 - 3968911
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  3968883 ttgagaaatgatatttgtacaaccatttt 3968911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 8810569 - 8810597
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  8810569 ttgagaaatgatatttgtacaaccatttt 8810597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 23220333 - 23220361
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  23220333 ttgagaaatgatatttgtacaaccatttt 23220361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 24088641 - 24088609
Alignment:
Q  179 tagcttgagaaatgatatttgtacaaccatttt 211  Q
    ||||| |||||||||||||||||||||||||||    
T  24088641 tagctagagaaatgatatttgtacaaccatttt 24088609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 28527854 - 28527882
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  28527854 ttgagaaatgatatttgtacaaccatttt 28527882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 28821357 - 28821329
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  28821357 ttgagaaatgatatttgtacaaccatttt 28821329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 39010210 - 39010182
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  39010210 ttgagaaatgatatttgtacaaccatttt 39010182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 51224911 - 51224883
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  51224911 ttgagaaatgatatttgtacaaccatttt 51224883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 25559702 - 25559730
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  25559702 ttgagaaatgatatttgtacaaccatttt 25559730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 28300284 - 28300312
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  28300284 ttgagaaatgatatttgtacaaccatttt 28300312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 29573429 - 29573401
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  29573429 ttgagaaatgatatttgtacaaccatttt 29573401  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 32722218 - 32722190
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  32722218 ttgagaaatgatatttgtacaaccatttt 32722190  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 47141673 - 47141645
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  47141673 ttgagaaatgatatttgtacaaccatttt 47141645  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 47484288 - 47484316
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  47484288 ttgagaaatgatatttgtacaaccatttt 47484316  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 48944783 - 48944755
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  48944783 ttgagaaatgatatttgtacaaccatttt 48944755  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 3919298 - 3919326
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  3919298 ttgagaaatgatatttgtacaaccatttt 3919326  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 31847258 - 31847230
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  31847258 ttgagaaatgatatttgtacaaccatttt 31847230  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 49621361 - 49621389
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  49621361 ttgagaaatgatatttgtacaaccatttt 49621389  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 51250348 - 51250320
Alignment:
Q  183 ttgagaaatgatatttgtacaaccatttt 211  Q
    |||||||||||||||||||||||||||||    
T  51250348 ttgagaaatgatatttgtacaaccatttt 51250320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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