View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7660_high_4 (Length: 731)

Name: NF7660_high_4
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7660_high_4
NF7660_high_4
[»] chr1 (12 HSPs)
chr1 (19-328)||(17993063-17993369)
chr1 (638-711)||(17993867-17993940)
chr1 (588-677)||(4652070-4652160)
chr1 (158-216)||(19318403-19318461)
chr1 (569-626)||(11839551-11839608)
chr1 (639-688)||(37200388-37200437)
chr1 (639-688)||(38544501-38544550)
chr1 (581-632)||(2987824-2987875)
chr1 (581-631)||(29938936-29938987)
chr1 (641-688)||(38548824-38548871)
chr1 (651-697)||(32882644-32882690)
chr1 (655-688)||(2987884-2987917)
[»] chr4 (6 HSPs)
chr4 (571-697)||(43373783-43373910)
chr4 (571-688)||(19432310-19432427)
chr4 (569-692)||(35800710-35800833)
chr4 (653-688)||(12296445-12296480)
chr4 (572-688)||(24739895-24740013)
chr4 (568-661)||(43077265-43077359)
[»] chr2 (10 HSPs)
chr2 (601-711)||(915161-915271)
chr2 (581-697)||(18681341-18681458)
chr2 (589-675)||(29043993-29044080)
chr2 (569-654)||(6173907-6173993)
chr2 (572-620)||(1269792-1269840)
chr2 (653-688)||(15360985-15361020)
chr2 (580-622)||(25504589-25504631)
chr2 (651-688)||(7696248-7696285)
chr2 (639-688)||(13699049-13699098)
chr2 (572-617)||(22884807-22884852)
[»] chr8 (5 HSPs)
chr8 (571-697)||(30235808-30235935)
chr8 (642-688)||(41791017-41791063)
chr8 (639-687)||(25184905-25184953)
chr8 (581-632)||(5215008-5215059)
chr8 (639-677)||(10552556-10552594)
[»] chr3 (7 HSPs)
chr3 (569-688)||(1652566-1652685)
chr3 (581-688)||(30935078-30935186)
chr3 (588-682)||(7966773-7966868)
chr3 (639-688)||(27399231-27399280)
chr3 (639-682)||(16266007-16266050)
chr3 (639-688)||(25594294-25594343)
chr3 (639-688)||(823182-823231)
[»] chr6 (10 HSPs)
chr6 (571-688)||(12794388-12794506)
chr6 (568-677)||(6946858-6946969)
chr6 (581-677)||(27774882-27774974)
chr6 (655-697)||(26215784-26215826)
chr6 (568-665)||(26534420-26534517)
chr6 (639-687)||(17278247-17278295)
chr6 (653-688)||(13098347-13098382)
chr6 (579-632)||(17278162-17278215)
chr6 (651-688)||(32935100-32935137)
chr6 (639-680)||(33968382-33968423)
[»] chr5 (5 HSPs)
chr5 (567-687)||(31742436-31742557)
chr5 (639-671)||(39024194-39024226)
chr5 (580-622)||(8731276-8731318)
chr5 (643-680)||(17853821-17853858)
chr5 (639-688)||(39183949-39183998)
[»] chr7 (6 HSPs)
chr7 (581-677)||(9349995-9350092)
chr7 (581-677)||(38485848-38485945)
chr7 (639-688)||(28534274-28534323)
chr7 (639-688)||(23983491-23983540)
chr7 (653-688)||(48058442-48058477)
chr7 (639-688)||(22567875-22567924)
[»] scaffold1613 (1 HSPs)
scaffold1613 (639-688)||(780-829)
[»] scaffold0119 (1 HSPs)
scaffold0119 (572-620)||(41862-41910)
[»] scaffold0499 (1 HSPs)
scaffold0499 (653-688)||(6828-6863)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 17993063 - 17993369
Alignment:
Q  19 ccccgtcatttcattctccttaaagaatttcaattgacgacctcatgtatcttcactttctttcccgccataaaggagcaactttgttcaaacatgttca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17993063 ccccgtcatttcattctccttaaagaatttcaattgacgacctcgtgtatcttcactttctttctcgccataaaggagcaactttgttcaaacatgttca 17993162  T
Q  119 ctgcgnnnnnnnnnnnnncgtttgaagaagattatacaactttcaagtttatgatttttaatgg-ttaaacaacaaatttgggatctaacctttctcaac 217  Q
    |||||             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17993163 ctgcgctttttttttt--cgtttgaagaagattatacaactttcaagtttatgatttttaatgggttaaacaacaaatttgggatctaacctttctcaac 17993260  T
Q  218 aatcaccttcgttgtactcgaatggtggtataaggtagagagtttgtaggttttcttggtttggatttgtgagtttaatggagaaatgttttctaggccc 317  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  17993261 aatcaccttcgttgtactcgaatggtggta--aggtagagagtttgtaggttttcttggtttgggtttgtgagtttaatggagaaatgttttctgggcca 17993358  T
Q  318 ggtttgcatta 328  Q
    |||||||||||    
T  17993359 ggtttgcatta 17993369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 638 - 711
Target Start/End: Original strand, 17993867 - 17993940
Alignment:
Q  638 gtcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaagtgattcctgaacttgcctacca 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  17993867 gtcaacacccataaggacaacacccaccaaaataaacatcaccccttaaaagtgattcctaaacttacctacca 17993940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 588 - 677
Target Start/End: Complemental strand, 4652160 - 4652070
Alignment:
Q  588 cgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatc 677  Q
    |||||||||||| ||||||  |||||||||||||||||| | | | ||||| |||||||||||||| |||||||||| |||| ||||||||    
T  4652160 cgtatataggcggaacacctgaaaacaaacaccaacaaaaaaaaccctgtgatcaacacccataagtacaacacccaacaaactaaacatc 4652070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 19318461 - 19318403
Alignment:
Q  158 ctttcaagtttatgatttttaat-ggttaaacaacaaatttgggatctaacctttctcaa 216  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||    
T  19318461 ctttcaagtttatgatttttaataggttaaataaaaaatttgggatct-acctttctcaa 19318403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 11839608 - 11839551
Alignment:
Q  569 aagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaa 626  Q
    ||||||||| ||||||||||||||| | ||| ||||||||||||||||  ||||||||    
T  11839608 aagtacaaactaaaggcgtcgtataaaagcggaacacccaaaaacaaatcccaacaaa 11839551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Complemental strand, 37200437 - 37200388
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||| ||| |||||||||||||| ||||||||||||||| |||||||    
T  37200437 tcaacactcatgaggacaacacccactaaaataaacatcaccacctaaaa 37200388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 38544501 - 38544550
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  38544501 tcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaa 38544550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 2987824 - 2987875
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacc 632  Q
    |||||| |||||||||||| |||| || |||||||||||||||||| |||||    
T  2987824 aaggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaacacc 2987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 631
Target Start/End: Original strand, 29938936 - 29938987
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaa-caccaacaaagacac 631  Q
    |||||||| |||||||||| |||||| ||||||||| |||||||||||||||    
T  29938936 aaggcgtcatatataggcggaacacctaaaaacaaaacaccaacaaagacac 29938987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 688
Target Start/End: Original strand, 38548824 - 38548871
Alignment:
Q  641 aacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||| ||||||| ||||| |||||||||||||||||||| |||||||    
T  38548824 aacactcataagggcaacatccaccaaaataaacatcaccacctaaaa 38548871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 697
Target Start/End: Complemental strand, 32882690 - 32882644
Alignment:
Q  651 aggacaacacccaccaaaataaacatcaccccctaaaagtgattcct 697  Q
    ||||||||||||||||||||| |||||||| ||||||| ||| ||||    
T  32882690 aggacaacacccaccaaaatatacatcaccgcctaaaactgactcct 32882644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 688
Target Start/End: Original strand, 2987884 - 2987917
Alignment:
Q  655 caacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||||||||||||||||||| ||||||    
T  2987884 caacacccaccaaaataaacatcacccactaaaa 2987917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 571 - 697
Target Start/End: Original strand, 43373783 - 43373910
Alignment:
Q  571 gtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaa 669  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||  |||| ||||||| |||||||||||||||||||||||    
T  43373783 gtacaaactaaaggcgttgtatataggcgaaacacccgaaaacaaaacccaacaaagacacccatgtgatcaacacacataaggacaacacccaccaaaa 43373882  T
Q  670 taaacatcaccccctaaaagtgattcct 697  Q
    ||||||||||||||||||| ||| ||||    
T  43373883 taaacatcaccccctaaaactgactcct 43373910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 571 - 688
Target Start/End: Complemental strand, 19432427 - 19432310
Alignment:
Q  571 gtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaa 669  Q
    |||||||  ||||||| ||||||||| || |||| || ||||||||  ||||||||| | ||||||   |||||||||||| ||| ||||||||||||||    
T  19432427 gtacaaacaaaaggcgccgtatatagacggaacatccgaaaacaaaacccaacaaagcc-cctctgccatcaacacccatagggataacacccaccaaaa 19432329  T
Q  670 taaacatcaccccctaaaa 688  Q
    |||| ||||||||||||||    
T  19432328 taaagatcaccccctaaaa 19432310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 692
Target Start/End: Complemental strand, 35800833 - 35800710
Alignment:
Q  569 aagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaa 667  Q
    ||||||||| ||| ||||  |||||||| || |||||| |||||||||||||||| || | |||  || | |||||||||||||| | |||||||| |||    
T  35800833 aagtacaaaataacggcgctgtatatagacggaacaccgaaaaacaaacaccaacgaaaatacccatgcgatcaacacccataagaa-aacacccatcaa 35800735  T
Q  668 aataaacatcaccccctaaaagtga 692  Q
    ||||||| |||| ||||||||||||    
T  35800734 aataaacctcactccctaaaagtga 35800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 12296480 - 12296445
Alignment:
Q  653 gacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||||||||| |||||||    
T  12296480 gacaacacccaccaaaataaacatcaccacctaaaa 12296445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 688
Target Start/End: Original strand, 24739895 - 24740013
Alignment:
Q  572 tacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaa-caccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaa 669  Q
    ||||||| |||  ||| ||| |||||||||||| | ||||||||| |||||| ||| |||||  || | ||| ||| |||||||| ||||||||| ||||    
T  24739895 tacaaataaaaaacgttgtaaataggcgaaacatctaaaaacaaaacaccaataaaaacacccttgcgatcaccactcataaggataacacccactaaaa 24739994  T
Q  670 taaacatcaccccctaaaa 688  Q
    |||||||| || |||||||    
T  24739995 taaacatccccacctaaaa 24740013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 661
Target Start/End: Complemental strand, 43077359 - 43077265
Alignment:
Q  568 gaagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacc 661  Q
    ||||||||||  |||  ||||||||||||||  ||||||  |||| ||||||||||||||||||| ||| | ||||||| || ||||||| ||||    
T  43077359 gaagtacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacaccaacaaagacacccctgcgatcaacactcaaaaggacatcacc 43077265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 601 - 711
Target Start/End: Original strand, 915161 - 915271
Alignment:
Q  601 aacacccaaaaacaaacaccaacaaagacacctctgtgtcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaagtgattcctgaa 700  Q
    ||||||| ||||||||||| |||||||||||| ||  |||| ||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  915161 aacacccgaaaacaaacactaacaaagacacccctacgtcaccacccataaggacaacacttaccaaaataaacatcatcccctaaaagtgattcctgaa 915260  T
Q  701 cttgcctacca 711  Q
    |||||||||||    
T  915261 cttgcctacca 915271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 581 - 697
Target Start/End: Complemental strand, 18681458 - 18681341
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatcac 679  Q
    |||| |||||||||||||| ||||||| |||||||| || |||||||| |||||||   |||||||||||||| ||||||||| | ||||||||||||||    
T  18681458 aaggtgtcgtatataggcggaacacccgaaaacaaatactaacaaagaaacctctgcaatcaacacccataagaacaacaccctctaaaataaacatcac 18681359  T
Q  680 cccctaaaagtgattcct 697  Q
    ||||||||| ||| ||||    
T  18681358 cccctaaaactgactcct 18681341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 589 - 675
Target Start/End: Original strand, 29043993 - 29044080
Alignment:
Q  589 gtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaaca 675  Q
    ||||||||||| ||||||  |||||||| ||||||||||||||| ||| | |||||||||| ||| ||| ||||||||||||||||||    
T  29043993 gtatataggcggaacacctgaaaacaaaaaccaacaaagacacccctgcgatcaacacccaaaagtacatcacccaccaaaataaaca 29044080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 654
Target Start/End: Original strand, 6173907 - 6173993
Alignment:
Q  569 aagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataagga 654  Q
    ||||||||| ||||| | ||||||||||| | |||||||||||||||||||||| | ||||||| ||| | ||| ||||||||||||    
T  6173907 aagtacaaactaaagacatcgtatataggtggaacacccaaaaacaaacaccaaaagagacacccctgcgatcagcacccataagga 6173993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 620
Target Start/End: Complemental strand, 1269840 - 1269792
Alignment:
Q  572 tacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacacc 620  Q
    |||||||||||||||||||| | ||||||||||||||| || |||||||    
T  1269840 tacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacacc 1269792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 15361020 - 15360985
Alignment:
Q  653 gacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||||||||| |||||||    
T  15361020 gacaacacccaccaaaataaacatcaccacctaaaa 15360985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 622
Target Start/End: Original strand, 25504589 - 25504631
Alignment:
Q  580 aaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaa 622  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||    
T  25504589 aaaggcgccgtatatagacgaaacacccaaaaataaacaccaa 25504631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 688
Target Start/End: Complemental strand, 7696285 - 7696248
Alignment:
Q  651 aggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  7696285 aggacaacacccaccaaaatacacatcaccacctaaaa 7696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 13699049 - 13699098
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||| | | || ||||||||||||||||||||||||| |||||||    
T  13699049 tcaacacccctgaagataacacccaccaaaataaacatcaccacctaaaa 13699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 22884807 - 22884852
Alignment:
Q  572 tacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaac 617  Q
    |||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  22884807 tacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 571 - 697
Target Start/End: Original strand, 30235808 - 30235935
Alignment:
Q  571 gtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaa 669  Q
    ||||||| |||||||  |||||||||||| |||| || ||||||||||||||||||||||||  || | |||||||||| ||||||||||||||||||||    
T  30235808 gtacaaactaaaggctccgtatataggcggaacatccgaaaacaaacaccaacaaagacacccttgcgatcaacacccaaaaggacaacacccaccaaaa 30235907  T
Q  670 taaacatcaccccctaaaagtgattcct 697  Q
    ||||||||||||||||||| ||| ||||    
T  30235908 taaacatcaccccctaaaactgactcct 30235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 688
Target Start/End: Original strand, 41791017 - 41791063
Alignment:
Q  642 acacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  41791017 acactcataaggacaacccccaccaaaataaacatcaccccctaaaa 41791063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 687
Target Start/End: Original strand, 25184905 - 25184953
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaa 687  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  25184905 tcaacactcatgaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 5215008 - 5215059
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacc 632  Q
    |||||| |||||||||||||||||||| ||||||||| | ||||||||||||    
T  5215008 aaggcgccgtatataggcgaaacacccgaaaacaaactctaacaaagacacc 5215059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 677
Target Start/End: Complemental strand, 10552594 - 10552556
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatc 677  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  10552594 tcaacacccttaaggacaacaccaaccaaaataaacatc 10552556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 569 - 688
Target Start/End: Original strand, 1652566 - 1652685
Alignment:
Q  569 aagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaa 667  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||  ||||||| |||||||||||  || | ||||||| |||||||||||||||||||||    
T  1652566 aagtacaaactaaaggcgtcgtatataggcggaacacccgaaat-aaacacccacaaagacacccttgcgatcaacactcataaggacaacacccaccaa 1652664  T
Q  668 aataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||    
T  1652665 aataaacatcaccccctaaaa 1652685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 581 - 688
Target Start/End: Original strand, 30935078 - 30935186
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgt-gtcaacacccataaggacaacacccaccaaaataaacatcac 679  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||||| | ||||  ||||||||| ||||  ||||| |||||||||||||||||||    
T  30935078 aaggtgtcgtatataagcgaaacacccgaaaacaaacaccaacaaagacaaccctgtaatcaacacccttaagagcaacatccaccaaaataaacatcac 30935177  T
Q  680 cccctaaaa 688  Q
    |||||||||    
T  30935178 cccctaaaa 30935186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 682
Target Start/End: Original strand, 7966773 - 7966868
Alignment:
Q  588 cgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatcacccc 682  Q
    ||||||||| || ||||||| ||||||||||| ||||||||||||| || | || |||||||||| |||||| |||| ||||||||||||||||||    
T  7966773 cgtatatagacggaacacccgaaaacaaacacaaacaaagacacctttgcgatccacacccataaagacaactcccatcaaaataaacatcacccc 7966868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 639 - 688
Target Start/End: Complemental strand, 27399280 - 27399231
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  27399280 tcaacacccatgaggacaacacccaccaaaataaacatcatcacctaaaa 27399231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 682
Target Start/End: Complemental strand, 16266050 - 16266007
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcacccc 682  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  16266050 tcaacacccatgaggacaacatccaccaaaataaacatcacccc 16266007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 25594294 - 25594343
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||| |||||||||||||||| ||||||||||||  |||||||    
T  25594294 tcaacacccatgaggacaacacccaccacaataaacatcactacctaaaa 25594343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 823182 - 823231
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||| |||||| ||||||||||||| ||| ||||| |||||||    
T  823182 tcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaa 823231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 571 - 688
Target Start/End: Complemental strand, 12794506 - 12794388
Alignment:
Q  571 gtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaa 669  Q
    ||||||| |||||||| ||||||||| || |||| || ||||| ||||||||||||||||| |||| | |||||||||| |||||||||| |||||||||    
T  12794506 gtacaaactaaaggcgccgtatatagacggaacatccgaaaacgaacaccaacaaagacacatctgcgatcaacacccaaaaggacaacatccaccaaaa 12794407  T
Q  670 taaacatcaccccctaaaa 688  Q
    |||||||||| || |||||    
T  12794406 taaacatcacaccttaaaa 12794388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 568 - 677
Target Start/End: Original strand, 6946858 - 6946969
Alignment:
Q  568 gaagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaa-caccaacaaagacacctctgtg-tcaacacccataaggacaacacccacc 665  Q
    ||||||||||  ||||||| |||||||||  | ||||| | |||||||| ||||||||||||||||  || | ||||||||||||||||||| |||||||    
T  6946858 gaagtacaaacaaaaggcgccgtatatagatggaacactcgaaaacaaaacaccaacaaagacacccttgcgatcaacacccataaggacaaaacccacc 6946957  T
Q  666 aaaataaacatc 677  Q
    ||||||||||||    
T  6946958 aaaataaacatc 6946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 677
Target Start/End: Complemental strand, 27774974 - 27774882
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatc 677  Q
    ||||||||||||||||  | |||| ||||||||||||||||||||||||||  ||  | ||||||||||     ||||||||||||||||||||||||    
T  27774974 aaggcgtcgtatatagatggaacatccaaaaacaaacaccaacaaagacactcctacgatcaacaccca-----acaacacccaccaaaataaacatc 27774882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 26215784 - 26215826
Alignment:
Q  655 caacacccaccaaaataaacatcaccccctaaaagtgattcct 697  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  26215784 caacacccaccaaaataaacaacaccccctaaaactgattcct 26215826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 665
Target Start/End: Original strand, 26534420 - 26534517
Alignment:
Q  568 gaagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctg-tgtcaacacccataaggacaacacccacc 665  Q
    ||||||||||  |||||||||||||||||||| ||||||  ||||| || ||||||||||||||| |||   | |||||||| ||||||| ||||||||    
T  26534420 gaagtacaaacaaaaggcgtcgtatataggcggaacacctgaaaac-aataccaacaaagacacccctgcaataaacacccaaaaggacatcacccacc 26534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 687
Target Start/End: Original strand, 17278247 - 17278295
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaa 687  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  17278247 tcaacacccatgcggacaacacccaccaaaataaacattaccacctaaa 17278295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Original strand, 13098347 - 13098382
Alignment:
Q  653 gacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||||||||| |||||||    
T  13098347 gacaacacccaccaaaataaacatcaccacctaaaa 13098382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 632
Target Start/End: Original strand, 17278162 - 17278215
Alignment:
Q  579 taaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacc 632  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||  |||||||||    
T  17278162 taaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 688
Target Start/End: Original strand, 32935100 - 32935137
Alignment:
Q  651 aggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  32935100 aggacaacacccaccaaaataaacaccaccacctaaaa 32935137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 680
Target Start/End: Original strand, 33968382 - 33968423
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcacc 680  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  33968382 tcaacacccttgaggacaacacccaccaaaatagacatcacc 33968423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 567 - 687
Target Start/End: Complemental strand, 31742557 - 31742436
Alignment:
Q  567 agaagtacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccacc 665  Q
    |||||||||||  ||||||| |||||||||||| ||||||| ||||||||||||  ||||||| ||  || | |||| |||||||||||||||||||||     
T  31742557 agaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacctgcaaagactcccttgcgatcaaaacccataaggacaacacccact 31742458  T
Q  666 aaaataaacatcaccccctaaa 687  Q
     ||||||||||| || ||||||    
T  31742457 gaaataaacatccccacctaaa 31742436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 671
Target Start/End: Original strand, 39024194 - 39024226
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaata 671  Q
    |||||||||||||||||||||||||||||||||    
T  39024194 tcaacacccataaggacaacacccaccaaaata 39024226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 622
Target Start/End: Complemental strand, 8731318 - 8731276
Alignment:
Q  580 aaaggcgtcgtatataggcgaaacacccaaaaacaaacaccaa 622  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||    
T  8731318 aaaggcgccgtatatagacgaaacacccaaaaataaacaccaa 8731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 680
Target Start/End: Original strand, 17853821 - 17853858
Alignment:
Q  643 cacccataaggacaacacccaccaaaataaacatcacc 680  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  17853821 cacccatgaggaaaacacccaccaaaataaacatcacc 17853858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 39183949 - 39183998
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||| | |||||||||||||| |||||||| |||||| |||||||    
T  39183949 tcaacacccttgaggacaacacccactaaaataaagatcaccacctaaaa 39183998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 677
Target Start/End: Complemental strand, 9350092 - 9349995
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatc 677  Q
    |||||| |||||||||||| ||||||   ||| || |||||||||||||||| |||   ||||| |||||||||||||||||||||||||||||||||    
T  9350092 aaggcgccgtatataggcggaacacctggaaaaaatcaccaacaaagacacccctgcaatcaacccccataaggacaacacccaccaaaataaacatc 9349995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 677
Target Start/End: Complemental strand, 38485945 - 38485848
Alignment:
Q  581 aaggcgtcgtatataggcgaaacacccaaaaacaaacaccaacaaagacacctctgtg-tcaacacccataaggacaacacccaccaaaataaacatc 677  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||| | | ||||| | |||||||||||||| |||||| ||| |||| ||||||||    
T  38485945 aaggcgtcgtaaataggcggaacacccgaaaacaaacaccaacaaaaaaaactctgcgatcaacacccataagtacaacatccagcaaactaaacatc 38485848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 28534274 - 28534323
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  28534274 tcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaa 28534323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Complemental strand, 23983540 - 23983491
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||| ||| ||||||||||||||||||||||||| |||| |||||||    
T  23983540 tcaacacacatgaggacaacacccaccaaaataaacaccaccacctaaaa 23983491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Original strand, 48058442 - 48058477
Alignment:
Q  653 gacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||||||||| |||||||    
T  48058442 gacaacacccaccaaaataaacatcaccacctaaaa 48058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 22567875 - 22567924
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||| || |||||||| ||||||||||| |||||||| |||||||    
T  22567875 tcaacacccctagggacaacatccaccaaaatacacatcaccacctaaaa 22567924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 780 - 829
Alignment:
Q  639 tcaacacccataaggacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    ||||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  780 tcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaa 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 620
Target Start/End: Original strand, 41862 - 41910
Alignment:
Q  572 tacaaattaaaggcgtcgtatataggcgaaacacccaaaaacaaacacc 620  Q
    |||||||||||||||||||| | ||||||||||||||| || |||||||    
T  41862 tacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacacc 41910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 6863 - 6828
Alignment:
Q  653 gacaacacccaccaaaataaacatcaccccctaaaa 688  Q
    |||||||||||||||||||||||||||| |||||||    
T  6863 gacaacacccaccaaaataaacatcaccacctaaaa 6828  T

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