View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_high_5 (Length: 730)
Name: NF7660_high_5
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 715
Target Start/End: Complemental strand, 46747711 - 46747030
Alignment:
| Q |
18 |
atatacaagtattggtttacttgttacctgatatttaagaaatcaatgaacaagtatcagctttatcactatttttagttgaaaattgtgcatattgaac |
117 |
Q |
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| T |
46747711 |
atatacaagtattggtttacttgttacctgatatttaagaaatcaatgaacaagtatcagctttatcactatttttagttgaaaattgtgcatattgaac |
46747612 |
T |
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| Q |
118 |
aaaaatgttgatagtataataccaagaaactatatgattcgattaactaaaacttgtataagaatgatttacaaaagccaatcaaaatagtaaaacaaat |
217 |
Q |
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| T |
46747611 |
aaaaatgttgatagtataataccaagaaactatatgattcgattaactaaaacttgtataagaatgatttacaaaagccaatcaaaatagtaaaacaaat |
46747512 |
T |
|
| Q |
218 |
tagcacatttaatttgatagtgtaaagagcataaacttgtataaaagtcacacctttttaatagatgaaatcaaaccatggatgaatctaggagcagtac |
317 |
Q |
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| T |
46747511 |
tagcacat----------------aagagcataaacttatataaaagtcacacctttttaatagatgaaatcaaaccatgaataaatctaggagctgtac |
46747428 |
T |
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| Q |
318 |
agttaactccaactgcgacaacttgcggacatgattctgcaattgaagcacattctaagatagaatcaccactagccacattgttttcatccttgcaaga |
417 |
Q |
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| T |
46747427 |
agttaactccaactgcgacaacttgtggacatgaatcagcaatggaagcacattctaagatagaatcaccactagccacattgttttcatccttgcaaga |
46747328 |
T |
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| Q |
418 |
aaaagaaaaccatgcaggaatttctatcccttcttcctctaaaagttcagcataagcctgtatatttgattgtagggaaaattaataggcatgctcaaaa |
517 |
Q |
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| T |
46747327 |
aaaagaaaaccatgcaggaatttctatcccttcttcctctaaaagttcagcataagcctgtatatttgattgtagggaaaattaataggcatgctcaaaa |
46747228 |
T |
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| Q |
518 |
tcaatgtgaaacttgtacaaatttgcaatggtaattggtaattacctgtgcatcaagcttgtttggaattgtttcaaaggcaattaagtcagctcctgcg |
617 |
Q |
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| T |
46747227 |
tcaatgtgaaacttgtacaaatttgcaatggtaattggtaattacctgtgcatcaagcttgtttggaattgtttcaaaggcaattaagtcagctcctgcg |
46747128 |
T |
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| Q |
618 |
tcaacgagtatttttaccctttccctgtgaaaatctttgagtgtctggacagtgattgcatcaccatagtcccctctatcaaaaacacacaattaaca |
715 |
Q |
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| T |
46747127 |
tcaacgagtatttttaccctttccctgtgaaaatctttgagtgtatggacagtgattgcatcaccatagtcccctctatcaaaaacacacaattaaca |
46747030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 478 - 551
Target Start/End: Original strand, 52614841 - 52614914
Alignment:
| Q |
478 |
tatatttgattgtagggaaaattaataggcatgctcaaaatcaatgtgaaacttgtacaaatttgcaatggtaa |
551 |
Q |
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| T |
52614841 |
tatatttgattgtaaacaaaattaataggcatgctcaaaatcaatgtgaaatttgtacaaatttgcaatggtaa |
52614914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 52614747 - 52614820
Alignment:
| Q |
235 |
tagtgtaaagagcataaacttgtataaaagtcacacctttttaatagatgaaatcaaaccatggatgaatctag |
308 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
52614747 |
tagtgtaaagaagataaccttatataaaagtcacacctttttaatagatgaaatcaaaccatgaataaatctag |
52614820 |
T |
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