View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7660_high_8 (Length: 564)
Name: NF7660_high_8
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 49 - 548
Target Start/End: Original strand, 2423621 - 2424120
Alignment:
| Q |
49 |
ttgggtcaaaaattgatatttatatattcttttcctacaacaagtccataaatcttgcatccaatccattcccacatgtttcaattgttcattagacaca |
148 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2423621 |
ttgggtcaaaagttgatatttatatattcttttcctacaacaagtccataaatcttgcatccaatccattcccacatgtttcaattgttcattagacaca |
2423720 |
T |
|
| Q |
149 |
tgcatgttttccttaatgctagacaaactccgtcttttttcacatatgaacaaaaacctttatttannnnnnnaattttacaaatcaaattcctatctat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2423721 |
tgcatgttttccttaatgctagacaaactccgtcttttttcacatatgaacaaacacctttatttatttttttaattttacaaatcaaattcctatctat |
2423820 |
T |
|
| Q |
249 |
aaatatttgttcaatttgttcacaatatcttcacaacatcatataccccatttctacatcaagcccttgcgtacgtgtcttagtttatttctttac-nnn |
347 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2423821 |
aaatatttgttcaatttgttcgcaatatcttcacaacatca-ctaccccatttctacatcaagcccttgtgtacgtgtcttagtttatttctttacaaaa |
2423919 |
T |
|
| Q |
348 |
nnnntccctttgaattaacacactagaatagaatggaacaggtaagacaaacaaatctcacttttgtacttatgtatgttattgcactctttatgttctt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2423920 |
aaaatccctttgaattaacacactagaatagaatggaacaggtaagacaaacaaatctcacttttgtacttatgtatgttatagcactctttatgttctt |
2424019 |
T |
|
| Q |
448 |
cacatttaaatcaaccaatggtattgaggaaactttaaatattgtgagttttggggccaatccaaacggtgaaactgattccaaaaatgcaatccttact |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2424020 |
cacatttaaatcaaccaatggtattgaggaaactttaaatattgtgagttttggggccaatccaaacggtgaatctgattccaaaaatgcaatccttact |
2424119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 13691822 - 13691867
Alignment:
| Q |
19 |
gaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
64 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
13691822 |
gaaggagaaaaacgatttagaggggtgattttgggtcaaaaattga |
13691867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University