View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7660_low_10 (Length: 501)
Name: NF7660_low_10
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 1156775 - 1156303
Alignment:
| Q |
16 |
acatcaattttattaacgtttctagaacaaatatatacaatactttattttttctattagaagatggaagattctacaagatctaacttaactcgtaaac |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156775 |
acatcaattttattaacgtt-ctagaacaaatatatacaatactttattttttctactaaaagatggaagattctacaagatctaacttaactcgtaaac |
1156677 |
T |
|
| Q |
116 |
tcgtaaatgattgtcacaaacgtgttgggaaagtcgtattgaaagtgaaaaccttta--agatttcaaacttcacaagtgagaaatgctttaatgaaatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156676 |
tcgtaaatgattgtcacaaacgtgttgggaaagtcgtattgaaagtgaaaacctttataagatttcaaacttcacaagtgagaaatgctttaatgaaatt |
1156577 |
T |
|
| Q |
214 |
aggtgaagttagcaacaaaactaaaataatgtttagc---ttatgagcttgaaaattttgagattgtattaggatatcatgtcgatgttgataaaggaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156576 |
aggtgaagttagcaacaaaactaaaataatgtttagcaacttatgagcttgaaaattttgagtttgtattaggatatcatgtcgatgttgataaaggaca |
1156477 |
T |
|
| Q |
311 |
attggatggtctcgttactttttcttgaaaatatagggaaatgattttgaaaatactctcatttttctgaaggaactgcttttgaaatgtatatagaacc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156476 |
attggatggtctcgttactttttcttgaaaatatagggaaatgattttgaaaatgctctaatttttctgaaggaactgcttttgaaatgtatatagaacc |
1156377 |
T |
|
| Q |
411 |
caaattccatgaaaatgaactattcgtagataatagaagaatcattttatatgaactgcttttgatacgattat |
484 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1156376 |
caaattccatgaaaatggactattcgtagataatagaagaatcattttatatgaactgcttttgatatgattat |
1156303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 39314994 - 39315074
Alignment:
| Q |
138 |
tgttgggaaagtcgtattgaaagtg-aaaacctttaagatttcaaacttcacaagtgagaaatgctttaatgaaattaggt |
217 |
Q |
| |
|
||||| |||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||| ||| |||| | ||||||||| |
|
|
| T |
39314994 |
tgttgagaaagtcgtattaaaagtgtaaaacttttaatatttcaaacttcacaagtaagagatgttttatttaaattaggt |
39315074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 9643762 - 9643700
Alignment:
| Q |
180 |
aaacttcacaagtgagaaatgctttaatgaaattaggtgaagttagcaacaaaactaaaataa |
242 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||| ||||||| | ||||| |||||||| |
|
|
| T |
9643762 |
aaacttcacaagtaagagatgctttattgaaattaggcgaagttaacgacaaacataaaataa |
9643700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 34567987 - 34568057
Alignment:
| Q |
172 |
aagatttcaaacttcacaagtgagaaatgctttaatgaaattaggtgaagttagcaacaaaactaaaataa |
242 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||| ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
34567987 |
aagatttcaaacttcataagtaagagatgctttatgaaaattaggtaaagttagctacaaacataaaataa |
34568057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University