View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_11 (Length: 485)
Name: NF7660_low_11
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 467
Target Start/End: Complemental strand, 45864199 - 45863729
Alignment:
| Q |
3 |
gtgtttgcactggctattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagctgtctatctttgaag |
102 |
Q |
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| T |
45864199 |
gtgtttccactggctattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagatgtctatctttgaag |
45864100 |
T |
|
| Q |
103 |
tgattcggttatttagcttatattttatagtgataagaaacatttttaagttacttttaaattgtatccccgcgtgaagtgcgttacagtctcaaaaatg |
202 |
Q |
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| T |
45864099 |
tgattcggttatttagcttatattttatagtgataagaaacatttttaagttacttttaaattgtatccccgcgtgaagtgcgtta--gtctcaaaaatg |
45864002 |
T |
|
| Q |
203 |
cctgttaatagtatattcccatgagtaaatcgcac--------tcatctttatagtagttgtttttgcagtattttaccatggaaatagtgtgttttctc |
294 |
Q |
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| T |
45864001 |
cctgttaatagtatattcccatgagtaaatcgcacagtgaaactcatctttatagtagttgtttttgcagtattttaccatggaaatagtgtgttttctc |
45863902 |
T |
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| Q |
295 |
aatgatattggttttatgatacgactactcaggattctagcttgaaccatatccactccggtgaagttgcttctcctgttggtgggcactgcttttcaga |
394 |
Q |
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| T |
45863901 |
aatgatattggttttatgatacgactactcaggattctagcttgaaccatatccactccggtgaagttgcttctccagttggtgggcactgcttttcaga |
45863802 |
T |
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| Q |
395 |
gaatatggattatcaaggagtaggaatgaggcaccagttccctgttgagagaaaatggactcttggccttaag |
467 |
Q |
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| T |
45863801 |
gaatatggattatcaaggagtaggaatgaggcaccagttccctgttgagagaaaatggactctttgccttaag |
45863729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 302 - 452
Target Start/End: Complemental strand, 4051276 - 4051126
Alignment:
| Q |
302 |
ttggttttatgatacgactactcaggattctagcttgaaccatatccactccggtgaagttgcttctcctgttggtgggcactgcttttcagagaatatg |
401 |
Q |
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| T |
4051276 |
ttggttttatgatatgaattctcaggattctggtttgaaccgtatccactctggtgaagttgcttctccagtcgttggacaccgctttccaggatatatt |
4051177 |
T |
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| Q |
402 |
gattatcaaggagtaggaatgaggcaccagttccctgttgagagaaaatgg |
452 |
Q |
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| T |
4051176 |
gattaccaaggagtaggaatgaggcaacagttccctgctgagagaaaatgg |
4051126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 452
Target Start/End: Original strand, 17406644 - 17406794
Alignment:
| Q |
302 |
ttggttttatgatacgactactcaggattctagcttgaaccatatccactccggtgaagttgcttctcctgttggtgggcactgcttttcagagaatatg |
401 |
Q |
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| T |
17406644 |
ttggtttaatgatatgattgctcaggattctggtttgagccgtatccactccggtgaagttgctcctccaatcggtggacaacgctttccaggacatatg |
17406743 |
T |
|
| Q |
402 |
gattatcaaggagtaggaatgaggcaccagttccctgttgagagaaaatgg |
452 |
Q |
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| T |
17406744 |
gattatcaaggagtaggaatgaggcaacagttccctgctgagagaaaatgg |
17406794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 17406270 - 17406440
Alignment:
| Q |
3 |
gtgtttgcactggctattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagctgtctatctt---tg |
99 |
Q |
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| T |
17406270 |
gtgtttccaccggctatcttggagctgagtttcaagagacaatggtcggtttgttttctcttcaattactgacaatttcataagttgtctgtctttaatg |
17406369 |
T |
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| Q |
100 |
aagtgattcggttatttagcttatattttatag-tgataagaaacatttttaagttacttttaaattgtat |
169 |
Q |
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| T |
17406370 |
aagcaattcagttatttagcttatatcttatagttgataagacacatttttaacttacttttaaatcgtat |
17406440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 17410631 - 17410686
Alignment:
| Q |
397 |
atatggattatcaaggagtaggaatgaggcaccagttccctgttgagagaaaatgg |
452 |
Q |
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| T |
17410631 |
atatggataatcaaggagtaggaatgaggcaacaattccctgttgagggaaaatgg |
17410686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 3576175 - 3576138
Alignment:
| Q |
143 |
catttttaagttacttttaaattgtatccccgcgtgaa |
180 |
Q |
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| T |
3576175 |
catttttaacttacttttaaattgtatccccgtgtgaa |
3576138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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