View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_12 (Length: 480)
Name: NF7660_low_12
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 48705820 - 48706268
Alignment:
| Q |
1 |
ttaaagctcaatgaacagtagtccaatcgagaattgtcaaatacaagatagatgaatatttctcaagttcgctaggtttacatgggtcgtggttgtgtca |
100 |
Q |
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| T |
48705820 |
ttaaagctcaatgaacagtagtccaatcgagaattgtcaaatacaagatagatgaatatttctcaagttcgctaggtttacatgggtcgtggtagtgtca |
48705919 |
T |
|
| Q |
101 |
gaattaagacacaggggagagacgagggacacaagcataagagagatggatgttt-tacgaaattgtccttccactttaaaggaaattacgaaaaatgct |
199 |
Q |
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| T |
48705920 |
gaattaagacacaggggagagacgagggacacaagcataagagagatggatgtttctacgaaattgt------------aaggaaattacgaaaaatgct |
48706007 |
T |
|
| Q |
200 |
attggtatcatatttgtgcggggatcatgttagaacatttgt-aatcattcagaataatgacaagagatgcatgggaggttgcggtagggacgatgatgt |
298 |
Q |
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| T |
48706008 |
attagtgtcatatttgtgcggggattatgtcagaacatttgttaatcat-----ataatgacaagagacgcatgggaggttgaggtagggacgatgatgt |
48706102 |
T |
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| Q |
299 |
taatcatttgttcattcgttgcgatattttgggaagatttggtatttactctctctttggttaggatgtgtcacggcaggtctagactctatatcaaaac |
398 |
Q |
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| T |
48706103 |
taatcatttgttcgttcgttgcaattttttgggaagatttggtctttgctctctctttggttaggatgtgtcacggcaggtctagactctatatcagaac |
48706202 |
T |
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| Q |
399 |
attttgctcattttacttctctcacaaggttctctaagaaccttcgcaaaattatgcatattctttg |
465 |
Q |
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| T |
48706203 |
attttgctcattttacttctctcac-aggttctctaagaaccttcgcaaaattatgcatattctttg |
48706268 |
T |
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Back To:
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 27163176 - 27163263
Alignment:
| Q |
354 |
tttggttaggatgtgtcacggcaggtctagactctatatcaaaacattttgctcattttacttctctcacaaggttctctaagaaccttc |
443 |
Q |
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|||||||||| || ||||| || |||||| |||||||||| | |||||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
27163176 |
tttggttagggtgcgtcacaacaagtctaggctctatatcagatcattttgctcatttta--tctctcacaagtttctctaagaatcttc |
27163263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 12496911 - 12496975
Alignment:
| Q |
153 |
ttttacgaaattgtccttccactttaaaggaaattacgaaaaatgctattggtatcatatttgtg |
217 |
Q |
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| T |
12496911 |
ttttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtg |
12496975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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