View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_13 (Length: 462)
Name: NF7660_low_13
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 9582941 - 9583262
Alignment:
| Q |
19 |
aaattcaaatgtattattgatggaaatgtgtatcctgaaaagctatatttgacataca----caaaagggtcnnnnnnnnncttcatcggatgcatacac |
114 |
Q |
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| T |
9582941 |
aaattcaaatgtattattgatggaaatgtatatcctgaaaagctatatttgacatacatgtacaaaagggtcttttta----ttcatcggatacatacac |
9583036 |
T |
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| Q |
115 |
gagtgnnnnnnngggatatgtgatttctaatgcattttctttttacaaaagaaacatctttgtatttacactagactggtatga------tgggtaacaa |
208 |
Q |
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| T |
9583037 |
gagtgtttttttgggatatgtgatttctaatgcattttctttttacaaaagaaacatctttgtatttacactagactggtatgatcatgatgggtaacaa |
9583136 |
T |
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| Q |
209 |
tgtgcaggttgtttcatggtttttcgtaggaatctcttagccatgattaacatgtgcatgtttttgatatctcaggggattttgtatgatatgtttcttt |
308 |
Q |
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| T |
9583137 |
tgtgcaggttgtttcatggttttttgtaggaatctcttagccatgattaacatgtgcatgtttttgacatctcaagggattttgtatgatatgtttcttt |
9583236 |
T |
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| Q |
309 |
ttggaacttgagtttttcccaatgta |
334 |
Q |
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| T |
9583237 |
ttgcaacttgagtttttcccaatgta |
9583262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 9611400 - 9611355
Alignment:
| Q |
30 |
tattattgatggaaatgtgtat-cctgaaaagctatatttgacata |
74 |
Q |
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| T |
9611400 |
tattattgatggaaatgtgcattcctgaaaagctatatctgacata |
9611355 |
T |
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