View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_15 (Length: 449)
Name: NF7660_low_15
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 15394167 - 15394603
Alignment:
| Q |
13 |
aatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtctt |
112 |
Q |
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| T |
15394167 |
aatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaactttgaaattttgatgtctacaacatgtctt |
15394266 |
T |
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| Q |
113 |
ttaagtgattttaagtaatttttcgatctatgttattttgatttgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtg |
212 |
Q |
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| T |
15394267 |
ttaagtgattttaagtaatttttcgatctatgttaatttgatttgtttcagaagttttctgcgctgttgcttctacaactggcatatcaaagtcttggtg |
15394366 |
T |
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| Q |
213 |
tcgtttatggagatctgggaacttcacccttatacgttttctataacacatttccttatggagttgatgattcggagaaagtgattggagctctttcttt |
312 |
Q |
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| T |
15394367 |
tcgtttatggagatctgggaacttcacccttatacgttttctataacacatttccttatggagttgatgattcggagaaagtgattggagctctttcttt |
15394466 |
T |
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| Q |
313 |
gatcatatactctcgtactcttgtgccgctgctcaaatatgttttcattgtattaagagcaaatgacaatggtcaaggtatatattgctttccaactttt |
412 |
Q |
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| T |
15394467 |
gatcatatactctcttactcttgtgccactgctcaaatatgttttcattgtattaagagcaaatgacaatggtcaaggtatatattgttttccaacattt |
15394566 |
T |
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| Q |
413 |
tggttaatttggatattaatggttggagtaaggaatt |
449 |
Q |
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| T |
15394567 |
tggttaatttggatattaatggttggactaaggaatt |
15394603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 15385732 - 15386168
Alignment:
| Q |
13 |
aatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
15385732 |
aatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggaaactgcaatttgcaactttgaaattttgatgtctacgacatgtctg |
15385831 |
T |
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| Q |
113 |
ttaagtgattttaagtaatttt-tcgatctatgttattttgatttgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggt |
211 |
Q |
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| T |
15385832 |
ttaagtgattttaagtaattttttcgatctatgttattttgatttgtttcagaagttttctgcgctgttgcttctacgactagcatatcaaagtcttggt |
15385931 |
T |
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| Q |
212 |
gtcgtttatggagatctgggaacttcacccttatacgttttctataacacatttccttatggagttgatgattcggagaaagtgattggagctctttctt |
311 |
Q |
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| T |
15385932 |
gtagtttacggagatttgggaacttcgcccttatatgttttctataacacatttcctcgtggagttgatgatccggagaaagtgattggcgctctttctt |
15386031 |
T |
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| Q |
312 |
tgatcatatactctcgtactcttgtgccgctgctcaaatatgttttcattgtattaagagcaaatgacaatggtcaaggtatatattgctttccaacttt |
411 |
Q |
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| T |
15386032 |
tgatcatatactctcttactcttgtgccgctgctcaaatacgttttcattgtattaagagcaaacgacaatggtcaaggtatgtattgttttccaactgt |
15386131 |
T |
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| Q |
412 |
ttggttaatttggatattaatggttggagtaaggaat |
448 |
Q |
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| T |
15386132 |
ttggttaatttggatattaatggttggactaaggaat |
15386168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 159 - 393
Target Start/End: Complemental strand, 38669414 - 38669180
Alignment:
| Q |
159 |
ttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttctataa |
258 |
Q |
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||||||| ||||||| ||||| |||| || || |||||||| |||||||| || |||||||||||| |||| ||||||||||| || |||||||| || |
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| T |
38669414 |
ttcagaaattttctgcattgttgattctgcggcttgcatatcagagtcttggcgtggtttatggagatttgggcacttcacccttgtatgttttctacaa |
38669315 |
T |
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| Q |
259 |
cacatttccttatggagttgatgattcggagaaagtgattggagctctttctttgatcatatactctcgtactcttgtgccgctgctcaaatatgttttc |
358 |
Q |
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| T |
38669314 |
tatatttccgaacggcgtgaaagatgaagaggaagtacttggagctctttctttgattatctactctcttactttggtgcctctcctcaaatatgttttt |
38669215 |
T |
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| Q |
359 |
attgtattaagagcaaatgacaatggtcaaggtat |
393 |
Q |
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| T |
38669214 |
attgtgttaagagcaaatgacaatggacaaggtat |
38669180 |
T |
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Back To:
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