View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_17 (Length: 374)
Name: NF7660_low_17
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 27981081 - 27981432
Alignment:
| Q |
10 |
aagaatattatctatcataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981081 |
aagaatattatctatcataattgatgaaacaagaatattcacattttttttgttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
27981180 |
T |
|
| Q |
110 |
cccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaactaagttag |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981181 |
cccaaatatgtaaggggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaactaagttag |
27981280 |
T |
|
| Q |
209 |
cttgctttacaagtaactgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981281 |
cttgctttacaagtaactgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattcttt |
27981380 |
T |
|
| Q |
309 |
ctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttac |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981381 |
ctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttac |
27981432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 28038383 - 28038734
Alignment:
| Q |
10 |
aagaatattatctatcataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28038383 |
aagaatattatctatcataattgatgaaacaagaatattcacattttttttgttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
28038482 |
T |
|
| Q |
110 |
cccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaactaagttag |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28038483 |
cccaaatatgtaaggggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaactaagttag |
28038582 |
T |
|
| Q |
209 |
cttgctttacaagtaactgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28038583 |
cttgctttacaagtaactgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcctattcttt |
28038682 |
T |
|
| Q |
309 |
ctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttac |
360 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28038683 |
ctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttac |
28038734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 27887765 - 27887950
Alignment:
| Q |
10 |
aagaatattatctatcataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27887765 |
aagaatattatctatcataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacat |
27887863 |
T |
|
| Q |
110 |
cccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
195 |
Q |
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|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
27887864 |
cccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27887950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 27946423 - 27946608
Alignment:
| Q |
10 |
aagaatattatctatcataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27946423 |
aagaatattatctatcataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacat |
27946521 |
T |
|
| Q |
110 |
cccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
195 |
Q |
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|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
27946522 |
cccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27946608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 28026666 - 28026851
Alignment:
| Q |
10 |
aagaatattatctatcataattgatgaaacaagaatattcacannnnnnnngttaataaaaatgcttgtatttcactatgcaacaatgatatttggacat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28026666 |
aagaatattatctatcataattgatgaaacaagaatattcatattttttt-gttaataaaaatgcttgtatttcactatgcaacaatgatagttggacat |
28026764 |
T |
|
| Q |
110 |
cccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
195 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
28026765 |
cccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
28026851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 16866753 - 16866695
Alignment:
| Q |
169 |
atacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
227 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||| |
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|
| T |
16866753 |
atacctatttatagtaaaagtatccaagtaactaagttagcttgcattacaagttactg |
16866695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 7431872 - 7431928
Alignment:
| Q |
166 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagt |
222 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||| |
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|
| T |
7431872 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgcattacaagt |
7431928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 16862508 - 16862447
Alignment:
| Q |
166 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
227 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| |||| |
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|
| T |
16862508 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgtattacaagttactg |
16862447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 5145746 - 5145779
Alignment:
| Q |
193 |
caagtaactaagttagcttgctttacaagtaact |
226 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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|
| T |
5145746 |
caagtaactaagctagcttgctttacaagtaact |
5145779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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