View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_18 (Length: 366)
Name: NF7660_low_18
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 50235108 - 50234765
Alignment:
| Q |
7 |
tttggtggtcatggagacatcgaaacatgatgtgccttagccaagaaacttggtctctaactcggcttaacttccacatccagaactctgccaatacaat |
106 |
Q |
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| T |
50235108 |
tttggtggacatggagacatcgaaacatgatgtgccttagccaagaaacttggtctccaactcggcttaacttccacatccaaaattatgccgatacaat |
50235009 |
T |
|
| Q |
107 |
caaagcaagttttcaaagcaacggtgtttcaacttctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagt |
206 |
Q |
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| T |
50235008 |
caaagcaagttttcaaagcaacggtgattcaactcctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagt |
50234909 |
T |
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| Q |
207 |
tgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctggcttttccggtttcattgcagattccattg |
306 |
Q |
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| T |
50234908 |
tgttcatgaactccaattcgtgcaggctttgggggagttattcgtaacagtgccggcttatacctctctggcttctccggtttcattgcagattccactg |
50234809 |
T |
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| Q |
307 |
acattctacttgctgagctctcggcaattcaccgcggtcttctc |
350 |
Q |
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| T |
50234808 |
acattctacttgctgagctctcggcaattcaccgcggtcttctc |
50234765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 149 - 349
Target Start/End: Complemental strand, 46954600 - 46954400
Alignment:
| Q |
149 |
tatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttatt |
248 |
Q |
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| T |
46954600 |
tatggtcaaatggaacagtaataatcatcactgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttatt |
46954501 |
T |
|
| Q |
249 |
cgtaacagtgccggtttatacctctctggcttttccggtttcattgcagattccattgacattctacttgctgagctctcggcaattcaccgcggtcttc |
348 |
Q |
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| T |
46954500 |
cgtaacagtgccggtttatacctctctggcttctccggtttcattgcagattccactgacattctgcttgctgagctctcggcaattcaccgcggtcttc |
46954401 |
T |
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| Q |
349 |
t |
349 |
Q |
| |
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| T |
46954400 |
t |
46954400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 77 - 268
Target Start/End: Complemental strand, 46954790 - 46954599
Alignment:
| Q |
77 |
cttccacatccagaactctgccaatacaatcaaagcaagttttcaaagcaacggtgtttcaacttctgatcgtatggtcaaatggaacagcaataatcat |
176 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| |
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| T |
46954790 |
cttccacatccagaattctgctgatactatcaaagcaagttttcaaagcaacggcgtttcacctactgatcgtatggtcaaatggaacagtaataatcat |
46954691 |
T |
|
| Q |
177 |
cactgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttata |
268 |
Q |
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| T |
46954690 |
cactgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttattcgtaacagtgccggtttata |
46954599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 26702068 - 26701906
Alignment:
| Q |
178 |
actgccatatccttaatgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctgg |
277 |
Q |
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|||| ||||| || |||||||||||||||||||| || ||||||| |||| |||| | ||||||| ||||||| ||||||| ||| | ||||||||||| |
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| T |
26702068 |
actgtcatattctaaatgtggatgggagttgttccggtactccaactcgcgcaggttatgggggaattattcgaaacagtgtcggcctttacctctctgg |
26701969 |
T |
|
| Q |
278 |
cttttccggtttcattgcagattccattgacattctacttgctgagctctcggcaattcaccg |
340 |
Q |
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||| ||||||||||||||||| || | ||| ||| | || || |||||| | ||||||||||| |
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| T |
26701968 |
cttctccggtttcattgcagactctactgatattttgctcgcagagctcaccgcaattcaccg |
26701906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 11052549 - 11052653
Alignment:
| Q |
193 |
atgtggatgggagttgttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctggcttttccggtttcat |
292 |
Q |
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|||| |||| ||||||||| || ||||||| |||| |||| |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||| |
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| T |
11052549 |
atgtagatgagagttgttctggtactccaactcgcgcaggttttggggg-gttattcaaaatagtgccggtttttacctctctggcttctccggtttcat |
11052647 |
T |
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| Q |
293 |
tgcaga |
298 |
Q |
| |
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|||||| |
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| T |
11052648 |
tgcaga |
11052653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 34361037 - 34361326
Alignment:
| Q |
9 |
tggtggtcatggagacatcgaaacatgatgtgccttagccaagaaacttggtctctaactcggcttaacttccacatccagaactctgccaatacaatca |
108 |
Q |
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|||||| ||||||| |||| |||||||||||||||||| | || |||||||| || || || |||| ||| |||| ||||| ||||| |||| || | |
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| T |
34361037 |
tggtggacatggaggcatcacaacatgatgtgccttagcaatgatacttggtcccttacgcgacttagtttctacattcagaattctgcggataccataa |
34361136 |
T |
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| Q |
109 |
aagcaagttttcaaagcaacggtgtttcaacttctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttg |
208 |
Q |
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|| | || ||||||| || | ||| | || |||||| ||||| | |||||| || ||||| |||| ||| || || || ||||| ||||| ||||| |
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| T |
34361137 |
aatccagctttcaaaacagcagtgccactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcacattctaaatgtagatggaagttg |
34361236 |
T |
|
| Q |
209 |
ttcaggaactccaattcgcacaggctttgggggagttattcgtaacagtgccggtttatacctctctggcttttccggtttcattgcaga |
298 |
Q |
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||| || | ||||| |||| |||| | ||| ||| ||||||| ||||||||||| ||||||||||| |||| ||||||||||| ||||| |
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| T |
34361237 |
ttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctcttgcttctccggtttcatcgcaga |
34361326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 9792715 - 9792776
Alignment:
| Q |
9 |
tggtggtcatggagacatcgaaacatgatgtgccttagccaagaaacttggtctctaactcg |
70 |
Q |
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|||||| ||||||||||||||||| |||||| |||| | | |||||||||||||||||||| |
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| T |
9792715 |
tggtggacatggagacatcgaaacttgatgtaccttggtaacgaaacttggtctctaactcg |
9792776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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