View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_22 (Length: 326)
Name: NF7660_low_22
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 25 - 314
Target Start/End: Complemental strand, 648779 - 648490
Alignment:
| Q |
25 |
catggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaatcttcatttattca |
124 |
Q |
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| T |
648779 |
catggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaatcttcatttattca |
648680 |
T |
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| Q |
125 |
gagcaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgttgttggttttgaga |
224 |
Q |
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| T |
648679 |
gaacaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgttgttggttttgaga |
648580 |
T |
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| Q |
225 |
aaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcagtacaatcaatataaatctctcctttatatccatatt |
314 |
Q |
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| T |
648579 |
aaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcagtacaatcaatataaatctctcctttatatccatatt |
648490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 686165 - 685955
Alignment:
| Q |
36 |
tagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaatcttcatttattcagagcaaaagct |
135 |
Q |
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| T |
686165 |
tagattgaaagtcactgaaagtgtgagtgtgatt-aatattttaaaatttaaaagtcta-tctgttcaa-acaaatattcatttattaagaaaaaaagct |
686069 |
T |
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| Q |
136 |
agcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgttgttggttttgagaaaatgttcatg |
235 |
Q |
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| T |
686068 |
agcaatgtttgaaaactgggtgtaatttataaaagttctattatgttttagcataactgaaattttaggacttgtttttgg--ttgagaaaatgttcatg |
685971 |
T |
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| Q |
236 |
ttttcatgtttagatt |
251 |
Q |
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|||| |||||| |||| |
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| T |
685970 |
tttttatgtttggatt |
685955 |
T |
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