View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7660_low_23 (Length: 320)
Name: NF7660_low_23
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_23 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 320
Target Start/End: Original strand, 22823822 - 22824047
Alignment:
| Q |
96 |
ctgtatgaattagactagttgaccagtcaattcgcctttaatgaaattaaatggcaattaatttaagccatattgatctcatctctatatttattataaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22823822 |
ctgtatgaattagactagttgaccagtcaattcgcctttaatgaaattaaatggcaattaatttaagccatattgatctcatctctatatttattataaa |
22823921 |
T |
|
| Q |
196 |
tatttgccttaa-nnnnnnnatcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaa |
294 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22823922 |
tatttgccttaatttttttgatcaactcttctcacattcttctcttttatttttattattgtggaatacatataagttcacgattctgattccattttaa |
22824021 |
T |
|
| Q |
295 |
taacgcactataactaataattgtta |
320 |
Q |
| |
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||| |||||||||||||||||||||| |
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|
| T |
22824022 |
taaagcactataactaataattgtta |
22824047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 16272342 - 16272447
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
16272342 |
atcaactcttctcacatccttctcttttgtttttattattgtggaatacatataagttcacgattctgattccattttaatcaagcactataactaataa |
16272441 |
T |
|
| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
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|
| T |
16272442 |
ttgtta |
16272447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 28322138 - 28322033
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
28322138 |
atcaactcttctcacatctttctcttttgtttttattattgtggaatacatataagttcacgattctgattccattttaatcaagcactataactaataa |
28322039 |
T |
|
| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
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|
| T |
28322038 |
ttgtta |
28322033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 6612832 - 6612768
Alignment:
| Q |
98 |
gtatgaattagactagttgaccagtcaattcgcctttaatgaaattaaatggcaattaatttaag |
162 |
Q |
| |
|
||||||| ||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
6612832 |
gtatgaacaagactggttgacgagtcaattagccattaatgaaattaaatggcaattaatttaag |
6612768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 113465 - 113360
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
113465 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataa |
113366 |
T |
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| Q |
315 |
ttgtta |
320 |
Q |
| |
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|||||| |
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| T |
113365 |
ttgtta |
113360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 157071 - 157176
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
157071 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataa |
157170 |
T |
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| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
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|
| T |
157171 |
ttgtta |
157176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 19047967 - 19047862
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19047967 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataa |
19047868 |
T |
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| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
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|
| T |
19047867 |
ttgtta |
19047862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 39832362 - 39832467
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39832362 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataa |
39832461 |
T |
|
| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
39832462 |
ttgtta |
39832467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 29995301 - 29995406
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29995301 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataa |
29995400 |
T |
|
| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
29995401 |
ttgtta |
29995406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 42393710 - 42393815
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataa |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
42393710 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaacaaagcactataactaataa |
42393809 |
T |
|
| Q |
315 |
ttgtta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
42393810 |
ttgtta |
42393815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 10025186 - 10025079
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacacat--aagttcacgattctgattccattttaataacgcactataactaat |
312 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
10025186 |
atcaactcttctcacatccttctcttttatttttattattgtggaatacacatacaagttcacgattctgattccattttaataaaggactataactaat |
10025087 |
T |
|
| Q |
313 |
aattgtta |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
10025086 |
aattgtta |
10025079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 32967355 - 32967459
Alignment:
| Q |
216 |
tcaactcttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataat |
315 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| |
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|
| T |
32967355 |
tcaattcttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattcccttttaataaaacattataactaataat |
32967454 |
T |
|
| Q |
316 |
tgtta |
320 |
Q |
| |
|
||||| |
|
|
| T |
32967455 |
tgtta |
32967459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 31972538 - 31972636
Alignment:
| Q |
222 |
cttctcacattcttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataacgcactataactaataattgtta |
320 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
31972538 |
cttctcacatccttctcttttatttttattattgtggaatacacataagttcacgattctgattccattttaataaagcactataactaataattgtta |
31972636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 41716 - 41609
Alignment:
| Q |
215 |
atcaactcttctcacattcttctcttttatttttattattgtggaatacac--ataagttcacgattctgattccattttaataacgcactataactaat |
312 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||| ||| |
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|
| T |
41716 |
atcaactcttctcacatccttctctttcatttttattattgtggaatacacatataagttcacgattctaattccattttaacaaagcactataacaaat |
41617 |
T |
|
| Q |
313 |
aattgtta |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
41616 |
aattgtta |
41609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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