View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_24 (Length: 303)
Name: NF7660_low_24
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 33373887 - 33374149
Alignment:
| Q |
18 |
caaaataccaaatttgtaattcaagtactgaatttgcattccctcaatcaacgagctatgatgggagtaaccatttcagcaacctctacatctaatccat |
117 |
Q |
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| T |
33373887 |
caaaataccaaatttttaattcaattactgaatttgcattccctcaatcaacgagctatgatgggagtaaccatttcagcaacctctacatctaatccat |
33373986 |
T |
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| Q |
118 |
aagtccaagacacctctaacaaagtaggagagggttgagtgagaagagaaagactaagaacaacttctcccatagttggtcttaacaaaggttgttcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33373987 |
aagtccaagacacctctaacaaagtaggagagggttgagtgagaagagaaagactaagaacaacttctcccatagttggtcttaacaaaggttgttcttc |
33374086 |
T |
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| Q |
218 |
taagcaattcactgccaaagtgaataaactaagagcttcaacaatattataaaaccttcctaa |
280 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
33374087 |
tatgcaattcactgccaaagtgaataaactaagagcttcaacaacattataaaacctccctaa |
33374149 |
T |
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