View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_27 (Length: 252)
Name: NF7660_low_27
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 31050891 - 31051119
Alignment:
| Q |
16 |
tatagtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31050891 |
tatagtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttcca |
31050990 |
T |
|
| Q |
116 |
gcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctc |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31050991 |
gcagatgcaactaataatatgtttttagcgaatgcctgaaatgcacctattgaaatttcatcggtaaaaatttcttcaaaatttgaactagatcggcctc |
31051090 |
T |
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| Q |
216 |
caacagaaactgagattatatcaacacca |
244 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
31051091 |
caacagaaactgagattatatcaacacca |
31051119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 31063360 - 31063584
Alignment:
| Q |
20 |
gtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcag |
119 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| |
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| T |
31063360 |
gtactgctgaagtctctgtcaattgtactagcagcaactgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcag |
31063459 |
T |
|
| Q |
120 |
atgcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaac |
219 |
Q |
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|||||||||||||||| ||| ||| | ||| ||||||||||||||||||| || |||||||||||||||||| |||||| ||||| | |||||||| | |
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| T |
31063460 |
atgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaacctcgtcggtaaaaatttcttcagaatttgtactagatgggcctccagc |
31063559 |
T |
|
| Q |
220 |
agaaactgagattatatcaacacca |
244 |
Q |
| |
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|||||| || ||||| ||||||||| |
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| T |
31063560 |
agaaacagatattatgtcaacacca |
31063584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 31108449 - 31108671
Alignment:
| Q |
22 |
actgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagat |
121 |
Q |
| |
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||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |
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| T |
31108449 |
actgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagat |
31108548 |
T |
|
| Q |
122 |
gcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacag |
221 |
Q |
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|||||||||||||| ||| ||| | ||| |||||||||||||||||||| || || ||||||||||||||| |||||| ||||| | |||||||| ||| |
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| T |
31108549 |
gcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcgtcagtaaaaatttcttcagaatttgtactagatgggcctccagcag |
31108648 |
T |
|
| Q |
222 |
aaactgagattatatcaacacca |
244 |
Q |
| |
|
|||| || ||||| ||||||||| |
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| T |
31108649 |
aaacagatattatgtcaacacca |
31108671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 31146199 - 31146363
Alignment:
| Q |
22 |
actgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagat |
121 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
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| T |
31146199 |
actgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgat |
31146298 |
T |
|
| Q |
122 |
gcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaat |
186 |
Q |
| |
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|||||||||||||| ||| ||| | ||| |||||||||||||||||||| ||||| |||||||| |
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|
| T |
31146299 |
gcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatcagtaaaaat |
31146363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 31164025 - 31164189
Alignment:
| Q |
22 |
actgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagat |
121 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
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| T |
31164025 |
actgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgat |
31164124 |
T |
|
| Q |
122 |
gcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaat |
186 |
Q |
| |
|
|||||||||||||| ||| ||| | ||| |||||||||||||||||||| ||||| |||||||| |
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|
| T |
31164125 |
gcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatcagtaaaaat |
31164189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 31201808 - 31201636
Alignment:
| Q |
20 |
gtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcag |
119 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||| ||||| ||||| ||||| |||||||||| ||||||||| |||| || |||| |
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| T |
31201808 |
gtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccaccggttggtccttcattacctgcag |
31201709 |
T |
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| Q |
120 |
atgcaactaataatatgtttttagtgaatgcctgaaatgcacctattgaaatttcatcggtaaaaatttcttc |
192 |
Q |
| |
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| |||||||||||||| ||| ||| | ||| || ||||| || ||||||| || || |||||||| ||||| |
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| T |
31201708 |
aggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttc |
31201636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 24267121 - 24267056
Alignment:
| Q |
29 |
aagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttcca |
94 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||||| |||||| || |||||||||||| ||||| |
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|
| T |
24267121 |
aagtttctatcaattgtgctagcagcaacactgaacaaccaaggcgccacattagtaacagttcca |
24267056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 37017889 - 37017974
Alignment:
| Q |
35 |
ctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcaga |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||| |||||||| | ||| | |||||| |||| |||||||| |
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|
| T |
37017889 |
ctatcaattgtactagctgcaacagtgaaagaccaaggtgcaacatttgtaacactcctaggagcaggtccatcattcccagcaga |
37017974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 42314157 - 42314113
Alignment:
| Q |
28 |
gaagtctctatcaattgtactagcagcaacagtgaacacccaagg |
72 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| | |||||| |
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| T |
42314157 |
gaagtctctatcaattgtgctagcagcaaccgtgaataaccaagg |
42314113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 56231342 - 56231269
Alignment:
| Q |
32 |
tctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtcc |
105 |
Q |
| |
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|||||||| || ||||| ||||||||||| || | |||||| |||||||| | |||| ||||||| |||||||| |
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|
| T |
56231342 |
tctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcc |
56231269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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