View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7660_low_28 (Length: 249)
Name: NF7660_low_28
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_28 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 27980592 - 27980833
Alignment:
| Q |
5 |
gtttggtgttggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaacc |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27980592 |
gtttggtggtggtaaataattgataag---agattcaatttttctacactttctcattcaccatttggtttcgtccccacaagctagttttctaacaacc |
27980688 |
T |
|
| Q |
105 |
attgtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27980689 |
attgtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacggaaagggcaatttcatctaaattggcaatacatatcga |
27980788 |
T |
|
| Q |
205 |
ttcactccatggaagaaaaaatatctaaacaggcagaaccggtaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27980789 |
ttcactccatggaagaaaaaatatctaaacaggcagaaccagtaa |
27980833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 28037894 - 28038135
Alignment:
| Q |
5 |
gtttggtgttggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaacc |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28037894 |
gtttggtggtggtaaataattgataag---agattcaatttttctacactttctcattcaccatttggtttcgtccccacaagctagttttctaacaacc |
28037990 |
T |
|
| Q |
105 |
attgtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28037991 |
attgtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacggaaagggcaatttcatctaaattggcaatacatatcga |
28038090 |
T |
|
| Q |
205 |
ttcactccatggaagaaaaaatatctaaacaggcagaaccggtaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28038091 |
ttcactccatggaagaaaaaatatctaaacaggcagaaccagtaa |
28038135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 27969007 - 27969219
Alignment:
| Q |
14 |
tggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaaccattgttttt |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27969007 |
tggtaaataattgataa---cagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagctatttttctaacaaccattgttttt |
27969103 |
T |
|
| Q |
114 |
cctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcgattcactcca |
213 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||| |||| ||||||||||| |||| ||||||| |||||||| || ||||||||||||||||||| || |
|
|
| T |
27969104 |
cctgggtgaatgtcaatgggtaaaaaaatataat-atgtcagtcagattgacggaaagggcaattccatctaaactgacaatacatatcgattcacttca |
27969202 |
T |
|
| Q |
214 |
tggaagaaaaaatatct |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27969203 |
tggaagaaaaaatatct |
27969219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 27887014 - 27887230
Alignment:
| Q |
8 |
tggtgttggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaaccatt |
107 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
27887014 |
tggtggtggtaaataattgataa---cagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaaccatt |
27887110 |
T |
|
| Q |
108 |
gtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcgattc |
207 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||||| |||| ||||||||||| |||| ||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
27887111 |
gtttttcctgggtgaatgtcaatgggtaaaaaattataat-atgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattgattc |
27887209 |
T |
|
| Q |
208 |
actccatggaagaaaaaatat |
228 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
27887210 |
acttcatggaagaaaaaatat |
27887230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 27945672 - 27945888
Alignment:
| Q |
8 |
tggtgttggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaaccatt |
107 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
27945672 |
tggtggtggtaaataattgataa---cagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaaccatt |
27945768 |
T |
|
| Q |
108 |
gtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcgattc |
207 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||||| |||| ||||||||||| |||| ||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
27945769 |
gtttttcctgggtgaatgtcaatgggtaaaaaattataat-atgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattgattc |
27945867 |
T |
|
| Q |
208 |
actccatggaagaaaaaatat |
228 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
27945868 |
acttcatggaagaaaaaatat |
27945888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 28025915 - 28026131
Alignment:
| Q |
8 |
tggtgttggtaaataattgataagtacagattcaatttttctacaatttctcatgcatcatttggtttcgtccccacaagctatttttctaacaaccatt |
107 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28025915 |
tggtggtggtaaataattgataa---cagattcaatttttctacaatttctcatgcaccatttggtttcgtccccacaagttatttttttaacaaccatt |
28026011 |
T |
|
| Q |
108 |
gtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaatttcatctaaattggcaatacatatcgattc |
207 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||||| |||| ||||||||||| |||| ||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
28026012 |
gtttttcctgggtgaatgtcaatgggtaaaaaattataat-atgtcagtcagattgacggaaatggcaattccatctaaattgacaatacatattgattc |
28026110 |
T |
|
| Q |
208 |
actccatggaagaaaaaatat |
228 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
28026111 |
acttcatggaagaaaaaatat |
28026131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 54431274 - 54431382
Alignment:
| Q |
78 |
tccccacaagctatttttctaacaaccattgtttttcctaggtgaatgtcaatggataaaaagatataataatgtatgtcagattgacagaaaaggcaat |
177 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||| ||| ||||||||||| | ||| |||||| |
|
|
| T |
54431274 |
tccccacaagctagtgttctaacaaccattgtttttcctgggtgaatgtcaatgggtaaaaa-atagaatactgtctgtcagattgataaaaagggcaat |
54431372 |
T |
|
| Q |
178 |
ttcatctaaa |
187 |
Q |
| |
|
| |||||||| |
|
|
| T |
54431373 |
tccatctaaa |
54431382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University