View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_30 (Length: 249)
Name: NF7660_low_30
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 648289 - 648051
Alignment:
| Q |
1 |
agtttacatccgctgaccaacttatctagcatgtatcaaaattttaaataataaaaagttcaaaaggattcagaaagtaagtttatttaacacaaataac |
100 |
Q |
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| T |
648289 |
agtttacatccgctgaccaacttatctagcatgtatcaaaattttaaataataaaaagttcaaaaggattcagaaagtaagtttatttaacacaaataac |
648190 |
T |
|
| Q |
101 |
aggatatggatatcagaatctactttgcaacttcagaaagttcatgaaataaactacaatcagatagctaccattttactatggaattctcatccgagtc |
200 |
Q |
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| T |
648189 |
aggatatggatatcagaatctactttgcaacttcagaaagttcatgaaataaactacaatcagatagctaccattttactatggaattctcatccgagtc |
648090 |
T |
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| Q |
201 |
atccattccagacccattgtcaaaaattgtaatcttctt |
239 |
Q |
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| T |
648089 |
atccattccagacccactgtcaaaaattgtaatcttctt |
648051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 685517 - 685299
Alignment:
| Q |
14 |
tgaccaacttatctagcatgtatcaaaattttaaataataaaaagttcaaaaggattcagaaagtaagtttattt-aacacaaataacaggatatggata |
112 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||| | ||||| ||| ||||||||| |||||| ||| ||| ||||||||||| |
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| T |
685517 |
tgaccaacaaatctagcatctatcaaaattttaaataataaaaagctacaaaggcttctgaaagtaaggttattttaactcaagtaacaggatat----- |
685423 |
T |
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| Q |
113 |
tcagaatctactttgcaacttcagaaagttcatgaaataaactacaatcagatagctaccattttactatggaattctcatccgagtcatccattccaga |
212 |
Q |
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| T |
685422 |
-cagaatgtacttaggaacttcaaaaa--tcatgaaataaactacaatcagatagctaccattttactagggaattctcattagagtcatccattccaga |
685326 |
T |
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| Q |
213 |
cccattgtcaaaaattgtaatcttctt |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
685325 |
gccattgtcaaaaattgtaatcttctt |
685299 |
T |
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