View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_6 (Length: 645)
Name: NF7660_low_6
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 183 - 634
Target Start/End: Complemental strand, 55263539 - 55263088
Alignment:
| Q |
183 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
282 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263539 |
atttcctgtgtgcgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55263440 |
T |
|
| Q |
283 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
378 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263439 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55263344 |
T |
|
| Q |
379 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
478 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263343 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55263244 |
T |
|
| Q |
479 |
aactacaattaatagaaacacatgtt----tttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
574 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263243 |
aactac----aatagaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55263148 |
T |
|
| Q |
575 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggtt |
634 |
Q |
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| T |
55263147 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggtt |
55263088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 183 - 634
Target Start/End: Complemental strand, 55270403 - 55269952
Alignment:
| Q |
183 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
282 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270403 |
atttcctgtgtgtgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55270304 |
T |
|
| Q |
283 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
378 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270303 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55270208 |
T |
|
| Q |
379 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
478 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270207 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55270108 |
T |
|
| Q |
479 |
aactacaattaatagaaacacatgtt----tttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
574 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270107 |
aactac----aatagaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55270012 |
T |
|
| Q |
575 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggtt |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270011 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggtt |
55269952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 55263693 - 55263569
Alignment:
| Q |
19 |
atcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263693 |
atcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaa |
55263594 |
T |
|
| Q |
119 |
gttttatgaaaaggtaacaatcgaa |
143 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
55263593 |
gttttatgaaaaggtaacaatcgaa |
55263569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 55270557 - 55270433
Alignment:
| Q |
19 |
atcctgatggctacacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55270557 |
atcctgatggctacacttttgcacttgttcaaagacctatagttcacgacccattctgtcaaataagtctccgcgttggtgatttagaacgtgccataaa |
55270458 |
T |
|
| Q |
119 |
gttttatgaaaaggtaacaatcgaa |
143 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
55270457 |
gttttatgaaaaggtaacaatcgaa |
55270433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 634
Target Start/End: Complemental strand, 8301226 - 8301111
Alignment:
| Q |
519 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
618 |
Q |
| |
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||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
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| Q |
619 |
tgcttatgcacaggtt |
634 |
Q |
| |
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|||||||||||||||| |
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| T |
8301126 |
tgcttatgcacaggtt |
8301111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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