View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_7 (Length: 572)
Name: NF7660_low_7
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Complemental strand, 13024299 - 13023757
Alignment:
| Q |
15 |
aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc |
114 |
Q |
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| T |
13024299 |
aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc |
13024200 |
T |
|
| Q |
115 |
tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaatattcaatttaagcacgctcttacaaaggaaactgcataca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13024199 |
tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaatattcaatttaagcacgctcttacaaaagaaactgcataca |
13024100 |
T |
|
| Q |
215 |
aagtcttggagtatttaacatgtttgaataacatggtaatcgaggttctagggtggaccaccttgatatatattaaaaggtgaactagtactaaaaaatc |
314 |
Q |
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| T |
13024099 |
aagtcttggaatatttaacatgtttgaataacatggtaatggaggttctagggtggaccaccttgatatatattcaaaggtgaactagtactaaaaaatc |
13024000 |
T |
|
| Q |
315 |
actatcctcatcttacggatgagctggtgatctatcagcgttggttcgacaaaaacaagaaaacatgaatatgagtttaattttgaggcacacttaaccg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13023999 |
actatcctcatcttacggatgagctggtgatctatcagcgttggttcgacaaaaacaagaaaacatgaatatgagtttaattttgaggcacacttgaccg |
13023900 |
T |
|
| Q |
415 |
ttttcttttgtttttgctgaaccgacgccaatgaagtcaacatttcatccctaaggacaaatgggggtcgtgaacttctactttgtgacgtatcacattg |
514 |
Q |
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| T |
13023899 |
ttttcttttgtttttgctgaactgacaccaatgaagtcaacatttcatccctaaggacaaatgggggtcgtgaacttctactttgtgacgtatatcattg |
13023800 |
T |
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| Q |
515 |
ttggaaaatcaacaaccacctgcttataatgatcttttaccta |
557 |
Q |
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| T |
13023799 |
ttggaaaatcaacaaacacccgcctataatgatcatttaccta |
13023757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 13068599 - 13068757
Alignment:
| Q |
15 |
aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc |
114 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068599 |
aatatgaagatttatcattgtcttataagtcacattcctcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc |
13068698 |
T |
|
| Q |
115 |
tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaa |
173 |
Q |
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| T |
13068699 |
tgtctataagcaaactcttttcctaggcatatccgaggacctgcctgcatttcaatcaa |
13068757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 4095696 - 4095651
Alignment:
| Q |
362 |
gacaaaaacaagaaaacatgaatatgagtttaattttgaggcacac |
407 |
Q |
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| T |
4095696 |
gacaaaaacgaggaaaaatgaatatgagttgaattttgaggcacac |
4095651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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