View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7660_low_9 (Length: 538)
Name: NF7660_low_9
Description: NF7660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7660_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Complemental strand, 14599801 - 14599292
Alignment:
| Q |
13 |
aatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaagtaactcatcctcaaat |
112 |
Q |
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| T |
14599801 |
aatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaagtaactcatcctcaaat |
14599702 |
T |
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| Q |
113 |
ggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagggatgaaagaggaaaagatgtcactccatgtgagtgtaggtatgtatac |
212 |
Q |
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| T |
14599701 |
ggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagagatgaaagaggaaaagatgtcactccatgtgagtgtaggtatgtatac |
14599602 |
T |
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| Q |
213 |
atatgttaaagttttgcattaagtccaaataacgacgtgcgacaaaatcagaaatgaatttttgaatttatccagttctaaattccagtcgttatttcaa |
312 |
Q |
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| T |
14599601 |
atatgttaaagttttgcattaagttcaaataacgacgtgcgacaaaatcagaaatgaa-atttgaatttatccatttctaaattccagtcgttatttcaa |
14599503 |
T |
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| Q |
313 |
ctttttaatagatatgtgtgagtgtgtggaaatttataatttgcattcatatcttgcaaatattattatgacttgtgcaatgaaactaacaagattacaa |
412 |
Q |
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| T |
14599502 |
ctttttaatagatatgtgtgagtgtgtggaaattgataatttgcattcatatcttgcaaatattattatgacttgtgcaatgaaactaacaagattacaa |
14599403 |
T |
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| Q |
413 |
aataatacaaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcctggatgtaaggagccatacaaag |
512 |
Q |
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| T |
14599402 |
aataataccaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcccggatgtaaggagccattcaaag |
14599303 |
T |
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| Q |
513 |
taggagaatac |
523 |
Q |
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| T |
14599302 |
taggagaatac |
14599292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 14608654 - 14608848
Alignment:
| Q |
13 |
aatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaagtaactcatcctcaaat |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| || |||||||||||||| |
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| T |
14608654 |
aatatgtttccaattctttgtttaccggaggattcaatagtgtaacaagagctcatctaatggatagagtgattgattctgaggtgactcatcctcaaat |
14608753 |
T |
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| Q |
113 |
ggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagggatgaaagaggaaaagatgtcactccatgtgagtgtaggtatg |
207 |
Q |
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| T |
14608754 |
ggcaggggctaaaggatctaaatgttcaatttgtgctggaaatattatgaaggatgagaggggacatgatgtgactccatgtgagtgtaggtatg |
14608848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 523
Target Start/End: Original strand, 14609074 - 14609201
Alignment:
| Q |
395 |
aaactaacaagattacaaaataatacaaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcctggat |
494 |
Q |
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| T |
14609074 |
aaactaactagaatatataataataccaattt-atcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggtt |
14609172 |
T |
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| Q |
495 |
gtaaggagccatacaaagtaggagaatac |
523 |
Q |
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||| ||||| |||||||||||||||||| |
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| T |
14609173 |
gtagagagccttacaaagtaggagaatac |
14609201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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