View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7661_high_3 (Length: 625)
Name: NF7661_high_3
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 622
Target Start/End: Complemental strand, 42942190 - 42941590
Alignment:
| Q |
19 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
118 |
Q |
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| T |
42942190 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
42942091 |
T |
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| Q |
119 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcta |
218 |
Q |
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| T |
42942090 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcga |
42941991 |
T |
|
| Q |
219 |
gatgtcaattcaattgttaagagtttgattttgtaaccagatgaaattcaaaactcatatgtagcagctgtaaatgacatgacgattaatgtcattgttg |
318 |
Q |
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| T |
42941990 |
gatgtcaattcaattgttaagagtttgattttgtaaccggatgaaattcaaaactcatatgtagcagttgtaaatgacatgacgattaatgtcattgttg |
42941891 |
T |
|
| Q |
319 |
ttaataataagttgacctaaaatcaacctaaaatgaataggatcaattaaggtagccaatgcctaatgctgcttgctattattttacctcagcagttgga |
418 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
42941890 |
ttaataataagttgacctaaaatcaacttaaaatgaataggatcaattaaggtagccagtgcctaatgctgcttgc---tactttacctcagcagttgga |
42941794 |
T |
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| Q |
419 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42941793 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
42941694 |
T |
|
| Q |
519 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaatcacaacaagtctaattgc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42941693 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatactgtgcacccttaatctctttaatcacaacaagtctaattgc |
42941594 |
T |
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| Q |
619 |
cttc |
622 |
Q |
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|||| |
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| T |
42941593 |
cttc |
42941590 |
T |
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