View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7661_high_5 (Length: 363)
Name: NF7661_high_5
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 44838224 - 44837888
Alignment:
| Q |
16 |
caccaagatacaccttttttccatatctactataccctttaagaaaacctgcaaggtgttgccaattttcggtggaaccaagttcaatatcaaaatctat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44838224 |
caccaagatacaccttttttccatatctactataccctttaagaaaacctgcaaggtgttgccaattttcggtggaaccaagttcaatatcaaaatctat |
44838125 |
T |
|
| Q |
116 |
tccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccataaaaattttgaaacgtttcttgcatcctcaattgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44838124 |
tccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccataaaaattttgaaacgtttcttgcatcctcaattgaa |
44838025 |
T |
|
| Q |
216 |
gataaagaatagcttccaattccgccaccaattgaaagtaaaactttgattcctttactttggcaatctttgatttctgagctgaattttgtgcatgaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44838024 |
gataaagaatagcttccaattccgccaccaattgaaagtaaaactttgattcctttactttggcaatctttgatttctgagctgaattttgtgcatgaat |
44837925 |
T |
|
| Q |
316 |
ttggaagtgatgggttgcaatgacctgcgagattcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837924 |
ttggaagtgatgggttgcaatgacctgcgagattcat |
44837888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 44849262 - 44849095
Alignment:
| Q |
65 |
tgcaaggtgttgccaattttcggtggaaccaagttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccaccc |
164 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||| ||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
44849262 |
tgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccaccc |
44849163 |
T |
|
| Q |
165 |
aagaaagtgttccataaaaattttgaaacgtttcttgcatcctcaattgaagataaagaatagcttcc |
232 |
Q |
| |
|
|||||||||||||||||| || |||| | | |||| ||||||||||||||||| ||||| || ||||| |
|
|
| T |
44849162 |
aagaaagtgttccataaatatcttgagaagcttctagcatcctcaattgaagacaaagagtatcttcc |
44849095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 44817309 - 44817227
Alignment:
| Q |
98 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
180 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44817309 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
44817227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 44834666 - 44834584
Alignment:
| Q |
98 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
180 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44834666 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata |
44834584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 17570995 - 17571077
Alignment:
| Q |
98 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
180 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
17570995 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
17571077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 48222511 - 48222567
Alignment:
| Q |
92 |
accaagttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttga |
148 |
Q |
| |
|
||||| |||||| |||||||||| ||||| || ||| ||||||||||||||||||| |
|
|
| T |
48222511 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
48222567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 43901341 - 43901273
Alignment:
| Q |
98 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaa |
166 |
Q |
| |
|
||||||||||||||| || |||||||| | |||||| || ||||| | ||||||||| || |||||||| |
|
|
| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaa |
43901273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University