View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7661_high_6 (Length: 311)
Name: NF7661_high_6
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 44837493 - 44837786
Alignment:
| Q |
10 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
109 |
Q |
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| T |
44837493 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
44837592 |
T |
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| Q |
110 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaagaaacactttcacaaaatcacaa |
209 |
Q |
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| T |
44837593 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaacaaacactt--------tcacaa |
44837684 |
T |
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| Q |
210 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcactctactggggcca |
309 |
Q |
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| T |
44837685 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattggggcca |
44837784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 44848775 - 44848876
Alignment:
| Q |
204 |
tcacaaagatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcactctactg |
303 |
Q |
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| T |
44848775 |
tcacaaagatggcaaagaattctcatacctt---gtcactttttctt---ttcctcactcttgttagaacctcctatgctggtggcatagccatctactg |
44848868 |
T |
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| Q |
304 |
gggccaaa |
311 |
Q |
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| T |
44848869 |
gggccaaa |
44848876 |
T |
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