View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7661_low_1 (Length: 854)
Name: NF7661_low_1
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 16 - 840
Target Start/End: Original strand, 48741480 - 48742305
Alignment:
| Q |
16 |
gtaacaaatcataagtttattatattaacaactttgatattcaacccatcatttgggttagctttgtggtattgacttggaacatgtgttctcctcaagg |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||| || |||| |
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| T |
48741480 |
gtaacaaatcataagtttgttatattaacaactttgatattcaacccatcatttaggttagccttgtggtattaacttgaaacatgtgttcttcttaagg |
48741579 |
T |
|
| Q |
116 |
tcttaagtaagtttagatggattgagtaacggagattcaggaggattgattcaacgacttaccaactaagtgaatttatatttatannnnnnnagagaaa |
215 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48741580 |
tctcaagtaagtttagatggattgagcaacggagattcacgagggttgattcaacgacttaccaactaagtgaatttatatttatatttttttagagaaa |
48741679 |
T |
|
| Q |
216 |
cttatatttatattgtttagtagattaaattgataatttggtcttaagcatagcttacaacaattgggcctgaaaagcccggcccatgaatgagcatgtc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48741680 |
cttatatttatattgtttagtagattaaattgataatttggccttaagcatagcttacaacaattgggcctgaaaagcccggcccatgaatgagcatgtc |
48741779 |
T |
|
| Q |
316 |
gttttctgtttcctcttgtaagcagtgctgaacagcgaacagtagatgaccaaaacggaaagaagaaagaaaaaatagccaccgtaaccgtaactctaac |
415 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48741780 |
gttttctgtttcctcttgtaagcagtgatgaacagcgaacagtagatgaccaaaaccgaaagaagaaagaaaaaatagccaccgtaaccgtaactctaac |
48741879 |
T |
|
| Q |
416 |
cgcactccttctctacgtttaacatctcgacgttactcgcgactctggaaccaccgcaaaattcccccaatcgccatggttgaacctcaacgaatttccg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48741880 |
cgcactccttctctacgtttaacatctcgacgttactcgcgactctggaaccaccgcaaaattcccccaatcgccatggttgaacctcaacgaatttccg |
48741979 |
T |
|
| Q |
516 |
ttcatcacgctctcggctctggcttaggttcttctcttcttccctctctctccttccgatttcattcaatcttttgcagatcctttagttttcttac-ta |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48741980 |
ttcatcacgctctcggctctggcttaggttcttctcttcttccctctctctccttccgatttcattcaatcttttgcagatcctttagttttcttactta |
48742079 |
T |
|
| Q |
615 |
cactttacaattgatcttgtttataattcgattcatgcgattgatttctatcttgaaacgaaaatcgtagttgactaannnnnnnnnnnnnnnngcgttt |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48742080 |
cactttacaattgatcttgtttataattcgattcatgcgattgatttctatcttgaaacgaaaatcgtagttgactaattttttatttgtttttgcgttt |
48742179 |
T |
|
| Q |
715 |
agttgctgatgtgttgctatggaagaattggcgtggaggagttacgttgctgatttctgcaaccacattgtggtatcttttcgagcgagccggttacaat |
814 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48742180 |
agttgctgatgtgttgctatggaagaattggcgtggaggagttacgttgctgatttctgcaaccacattgtggtatcttttcgagcgagccggttacaat |
48742279 |
T |
|
| Q |
815 |
ttcttatcgtttgttgcaaatgtgat |
840 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
48742280 |
ttcttatcgtttgttgcaaatgtgat |
48742305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 547 - 687
Target Start/End: Original strand, 35110115 - 35110258
Alignment:
| Q |
547 |
ttctcttcttccctctctctccttccgatttcattcaatcttttgcagatcctttagttttcttact-acactttacaattgatcttgtttataattcga |
645 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| || ||||||| || ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
35110115 |
ttctcttcttccctctctctccttccgatt-cattcaatcttttacaaatcctttgcttctcttacttacacttaacaattgatcttgtttataattcga |
35110213 |
T |
|
| Q |
646 |
ttcatgcgat---tgatttctatcttgaaacgaaaatcgtagttg |
687 |
Q |
| |
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|||||||||| | ||||||||||||||| |||||| |||||| |
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| T |
35110214 |
ttcatgcgatcgatcatttctatcttgaaaacaaaatcatagttg |
35110258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 760
Target Start/End: Original strand, 35110253 - 35110299
Alignment:
| Q |
714 |
tagttgctgatgtgttgctatggaagaattggcgtggaggagttacg |
760 |
Q |
| |
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|||||||||||||||| || | ||||||||||||||||||||||||| |
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| T |
35110253 |
tagttgctgatgtgttacttttgaagaattggcgtggaggagttacg |
35110299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 586
Target Start/End: Complemental strand, 55481008 - 55480972
Alignment:
| Q |
550 |
tcttcttccctctctctccttccgatttcattcaatc |
586 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
55481008 |
tcttcttccctctctctccttccgatttcattcaatc |
55480972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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