View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7661_low_2 (Length: 698)
Name: NF7661_low_2
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 2097073 - 2096595
Alignment:
| Q |
11 |
tgttgggggttctgtggggggtttctctgctgtttcatctgatttaaaaattagtcccttgacacttattctcgaattgctatgattgctttgctttgaa |
110 |
Q |
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| T |
2097073 |
tgttgggggttctgtggggggtttctctgctgtttcctctgatttaaaaattagtcccttgacacttattctcgaattgctatgattgctttgctttgaa |
2096974 |
T |
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| Q |
111 |
tgtatgctttgaactcctgaaccctttctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatg |
210 |
Q |
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| T |
2096973 |
-------------ctcctgaaccctgtctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatg |
2096887 |
T |
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| Q |
211 |
atatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacattcatttaaagctctttttgtc |
310 |
Q |
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| T |
2096886 |
atatttcaagataattgaacttcttagatggccaagtatgttggttaagttcaacaccgatttccttgataagctgcattcatttaaagctctatttgtc |
2096787 |
T |
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| Q |
311 |
atttgcagggacagaagtatatacatat--atgcatacatacatttaatcaaaactctagtaatctaaatcaacaaatttgtctcaatcttaaaatcagt |
408 |
Q |
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| T |
2096786 |
atttgcagggacagaagtatatacatatacatgcatacatacatttaatcaaaactctagtaatccaaatcaacaaatttgtttcaatcttaaaatcagt |
2096687 |
T |
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| Q |
409 |
aactagagtaggccatccctgtgaaactgaaaccataactgcaaatatgacatagttgattacaatatatcatctttgtacatggtaatcatggata |
505 |
Q |
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| T |
2096686 |
aactatagtaggtca-----gtgaaactgaaaccataactgcaaatatgacatagttgattacaatctatcatctttgtacatggtaattatggata |
2096595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 510 - 681
Target Start/End: Complemental strand, 2096522 - 2096343
Alignment:
| Q |
510 |
caagtaaattttgcgtcatagtaactcattgtttgtctagatagaaatcagtcacagagatcaaaatatttgatctttatatggattttcattacttaat |
609 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
2096522 |
caagtaaattttgtgtcatagtaactcattgtttgtctagatagaaatcagtcacagagatcaaaatatttgatcgttatgtggattttcattacttaat |
2096423 |
T |
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| Q |
610 |
ta-------atta-ctggctgattatctttatgaattgaaatttaacatgacttattttgtgcaataaaattggtggaaa |
681 |
Q |
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| T |
2096422 |
tactggctgattatctgattggttatctttatgaattgaaatttaacatgacttatttagtgcactaaaattgttggaaa |
2096343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 2092905 - 2092747
Alignment:
| Q |
132 |
ccctttctttgaaataattattgaatttcaaaaatttaaatccaattgaacttcttgtcgagtaactatccttcatatgat---atttcaagataattga |
228 |
Q |
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|||| |||||| |||||||||||||||||||||| ||| | | ||||||||||||| |||||||||||||||| | | |||||| |||||||| |
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| T |
2092905 |
ccctgtctttgtaataattattgaatttcaaaaaattatacctgattgaacttcttg---agtaactatccttcatcttctggcatttcagcataattga |
2092809 |
T |
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| Q |
229 |
acttcttagatggccaagtatgttggttaagttcaacactgatttccttgataagctacatt |
290 |
Q |
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| T |
2092808 |
acctctttgctggccaagtatgttggttaagttcaacattggtttccttaacaagctgcatt |
2092747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 1562335 - 1562288
Alignment:
| Q |
243 |
caagtatgttggttaagttcaacactgatttccttgataagctacatt |
290 |
Q |
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| T |
1562335 |
caagtatgttggttaagttcaacattggtttccttgataagctgcatt |
1562288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 2092645 - 2092546
Alignment:
| Q |
398 |
ttaaaatcagtaactagagtaggccatccctgtgaaactgaaaccataactgcaaatatgacata---gttgattacaatatatcatctttgtacatggt |
494 |
Q |
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| T |
2092645 |
ttaaaatcagtaagtagagtaggtcatca--gtgaaacctaaaccataactgcaa-tatgacatactagttgactacaacctatcatctatgtacatggt |
2092549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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