View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7661_low_4 (Length: 363)
Name: NF7661_low_4
Description: NF7661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7661_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 103 - 352
Target Start/End: Complemental strand, 30895737 - 30895486
Alignment:
| Q |
103 |
attattttgtgagtatatatatgctggaattagcaatgattggcttgtaaataaataaactgacattcatggatagaagatggtatttcaacagcatttg |
202 |
Q |
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| T |
30895737 |
attattttgcgagtatatatatgctggaattaacaatgattgacttgtaaataaataaacggacattcatggttagaagatggtatttcaacagcatttg |
30895638 |
T |
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| Q |
203 |
tt--tgtacaataatctttacactactatatggtttatcagtaatctgagtttgattataatttagttcattatctacctttccattgtttttgttcttg |
300 |
Q |
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| T |
30895637 |
ttattgtacaataatctttacactactatatggtttatcagtaatctgagtttgattataatttagttcattatctacctttccattgtttttgttcttg |
30895538 |
T |
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| Q |
301 |
ttgattggctaaacctagcgggaaaaagaaacttcatttcaaccctattcat |
352 |
Q |
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| T |
30895537 |
ttgattggctaaacctagcagggaaaataaacttcatttcaaccctattcat |
30895486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 26 - 309
Target Start/End: Original strand, 30716480 - 30716757
Alignment:
| Q |
26 |
ttagtagggaagtagttttgtagtatatagactaattttggcatagaattgaattactacttaccatgcatgaaaatattattttgtgagta-tatatat |
124 |
Q |
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| T |
30716480 |
ttagtagggaagttgttttgta---tatagactcattttggcatagaattgaataact---taccatgcatgaaaatattatttagctagtagtatatat |
30716573 |
T |
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| Q |
125 |
gctggaattagcaatgattggcttgtaaataaataaactgacattcatggatagaagatggtatttcaacagcatttgtt--tgtacaataatctttaca |
222 |
Q |
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| T |
30716574 |
g-tggaattagcagtgattggtttgtgaataaataaacgtgcattcattgttagaagatggtatttcaataggatttgttattgtacaataatctttaca |
30716672 |
T |
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| Q |
223 |
ctactatatggtttatcagtaatctgagtttgattataatttagttcattatctacctttccattgtttttgt-tcttgttgattggc |
309 |
Q |
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| T |
30716673 |
cta---tatggtttataggtaatctgattttgattgttatttagttcattatctacctttccattgtttttgtctcttgttgcttggc |
30716757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 309
Target Start/End: Original strand, 28119039 - 28119315
Alignment:
| Q |
26 |
ttagtagggaagtagttttgtagtatatagactaattttggcatagaattgaattactacttaccatgcatgaaaatattattttgtgagta-tatatat |
124 |
Q |
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||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| | | |||| ||||||| |
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| T |
28119039 |
ttagtagggaagttgttttgta---tatagactcattttggcatagaattgaataact---taccatgcatgaaaatattatctagctagtagtatatat |
28119132 |
T |
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| Q |
125 |
gctggaattagcaatgattggcttgtaaataaataaactgacattcatggatagaagatggtatttcaacagcatttgt--ttgtacaataatctttaca |
222 |
Q |
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||||||||||||| ||||||| |||| |||||||||||| ||||||| | |||||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
28119133 |
gctggaattagcagtgattggtttgtgaataaataaacttgcattcattgttagaagatggtatttcaataggatttgttattgtacaataatctttaca |
28119232 |
T |
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| Q |
223 |
ctactatatggtttatcagtaatctgagtttgattataatttagttcattatctacctttccattgtttttgt-tcttgttgattggc |
309 |
Q |
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| T |
28119233 |
c-----tatggtttataggtaatctgattttgattgttatttagttcattatctacctttccattgtttttgtctcttgttgcttggc |
28119315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 971313 - 971151
Alignment:
| Q |
147 |
ttgtaaataaataaactgacattcatggatagaagatggtatttcaacagcatttgtt--tgtacaataatctttacactactatatggtttatcagtaa |
244 |
Q |
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|||| ||||||||||| ||||||| | |||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
971313 |
ttgtgaataaataaacgtgcattcattgttagaagatggtatttcaataggatttgttattgtacaataatctttacacta---tatggtttataggtaa |
971217 |
T |
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| Q |
245 |
tctgagtttgattataatttagttcattatctacctttccattgtttttgt-tcttgttgattggc |
309 |
Q |
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||||| ||||||| | ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
971216 |
tctgattttgattgttatttagttcattatctacctttcgattgtttttgtctcttgttgcttggc |
971151 |
T |
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