View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7662_high_2 (Length: 372)

Name: NF7662_high_2
Description: NF7662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7662_high_2
NF7662_high_2
[»] chr4 (36 HSPs)
chr4 (117-354)||(24763781-24764026)
chr4 (130-354)||(24731534-24731766)
chr4 (143-349)||(24692102-24692316)
chr4 (230-346)||(24722881-24722997)
chr4 (1-108)||(34778425-34778532)
chr4 (1-108)||(19901882-19901989)
chr4 (1-108)||(24073620-24073727)
chr4 (1-108)||(56558283-56558390)
chr4 (4-108)||(23610649-23610753)
chr4 (1-108)||(5416430-5416536)
chr4 (1-108)||(12312439-12312547)
chr4 (1-108)||(3952134-3952241)
chr4 (1-108)||(5763126-5763233)
chr4 (1-108)||(18207004-18207111)
chr4 (28-108)||(52018794-52018874)
chr4 (1-104)||(30567905-30568008)
chr4 (1-108)||(33247094-33247201)
chr4 (48-108)||(33524313-33524373)
chr4 (1-108)||(33262516-33262623)
chr4 (1-108)||(38079684-38079791)
chr4 (28-108)||(12153185-12153265)
chr4 (1-108)||(39862521-39862628)
chr4 (1-70)||(56269078-56269147)
chr4 (1-108)||(1871281-1871387)
chr4 (126-212)||(24723059-24723145)
chr4 (21-108)||(47922330-47922418)
chr4 (1-70)||(37002253-37002322)
chr4 (1-70)||(42010121-42010190)
chr4 (1-113)||(23474115-23474226)
chr4 (5-70)||(32146510-32146576)
chr4 (1-70)||(5524451-5524520)
chr4 (1-70)||(36688190-36688259)
chr4 (5-77)||(25219003-25219077)
chr4 (1-43)||(31862249-31862291)
chr4 (1-70)||(56453822-56453891)
chr4 (80-108)||(49811509-49811537)
[»] chr7 (24 HSPs)
chr7 (1-108)||(9559018-9559125)
chr7 (1-108)||(4888471-4888578)
chr7 (1-108)||(16366522-16366629)
chr7 (1-108)||(21151156-21151263)
chr7 (21-108)||(44647988-44648075)
chr7 (1-108)||(45260391-45260498)
chr7 (1-105)||(7362572-7362676)
chr7 (1-108)||(18198260-18198367)
chr7 (1-108)||(25084690-25084799)
chr7 (1-108)||(47226040-47226145)
chr7 (22-108)||(989154-989239)
chr7 (1-105)||(12139330-12139435)
chr7 (1-108)||(33450510-33450618)
chr7 (1-105)||(39855781-39855884)
chr7 (1-108)||(47500246-47500354)
chr7 (1-66)||(32915960-32916025)
chr7 (1-70)||(47799902-47799971)
chr7 (1-108)||(34985909-34986017)
chr7 (5-70)||(19027685-19027751)
chr7 (5-70)||(20726885-20726951)
chr7 (46-108)||(47271112-47271173)
chr7 (1-64)||(19889042-19889105)
chr7 (5-70)||(14696759-14696825)
chr7 (1-70)||(28528555-28528624)
[»] chr2 (22 HSPs)
chr2 (1-108)||(35316829-35316936)
chr2 (1-108)||(13238685-13238792)
chr2 (1-108)||(28564896-28565003)
chr2 (1-108)||(23259451-23259558)
chr2 (28-108)||(45625043-45625123)
chr2 (45-108)||(11864917-11864980)
chr2 (3-108)||(2063359-2063464)
chr2 (1-70)||(374997-375066)
chr2 (24-108)||(4446860-4446944)
chr2 (5-77)||(28029834-28029905)
chr2 (1-113)||(36758821-36758932)
chr2 (37-108)||(40640709-40640781)
chr2 (1-108)||(30857643-30857749)
chr2 (1-70)||(8988859-8988928)
chr2 (1-70)||(23459848-23459917)
chr2 (2-70)||(30709115-30709183)
chr2 (37-92)||(38824065-38824121)
chr2 (5-70)||(3594865-3594931)
chr2 (5-70)||(13780506-13780572)
chr2 (21-70)||(41435205-41435255)
chr2 (28-77)||(3354775-3354824)
chr2 (80-108)||(32009939-32009967)
[»] chr8 (19 HSPs)
chr8 (1-108)||(28069723-28069830)
chr8 (1-105)||(10672481-10672583)
chr8 (1-106)||(30426635-30426740)
chr8 (1-108)||(36991360-36991467)
chr8 (1-108)||(44859133-44859238)
chr8 (1-108)||(10652581-10652688)
chr8 (5-104)||(40695216-40695314)
chr8 (1-108)||(41511266-41511373)
chr8 (1-66)||(24102020-24102085)
chr8 (28-78)||(12177575-12177625)
chr8 (28-78)||(12422003-12422053)
chr8 (1-70)||(26749550-26749619)
chr8 (56-108)||(5033311-5033363)
chr8 (1-77)||(34612568-34612644)
chr8 (24-108)||(37966408-37966491)
chr8 (1-108)||(45113274-45113382)
chr8 (21-63)||(5033108-5033150)
chr8 (5-70)||(17867661-17867727)
chr8 (21-108)||(6014218-6014306)
[»] chr5 (22 HSPs)
chr5 (1-108)||(18625385-18625492)
chr5 (1-108)||(35660573-35660680)
chr5 (1-108)||(11775797-11775904)
chr5 (1-108)||(32129581-32129688)
chr5 (1-108)||(37266735-37266842)
chr5 (1-108)||(4895699-4895806)
chr5 (1-108)||(14349807-14349914)
chr5 (1-108)||(13032122-13032229)
chr5 (1-104)||(34827196-34827299)
chr5 (1-108)||(40753126-40753233)
chr5 (1-107)||(39902419-39902525)
chr5 (1-92)||(3057135-3057225)
chr5 (2-108)||(43309113-43309219)
chr5 (1-70)||(36290606-36290675)
chr5 (1-100)||(8440943-8441042)
chr5 (1-113)||(29340999-29341110)
chr5 (1-77)||(2984385-2984461)
chr5 (1-70)||(3041309-3041379)
chr5 (1-54)||(4592804-4592857)
chr5 (1-70)||(41660110-41660179)
chr5 (20-108)||(18653384-18653471)
chr5 (1-66)||(32316509-32316570)
[»] chr3 (18 HSPs)
chr3 (1-108)||(43719911-43720018)
chr3 (21-111)||(46167417-46167507)
chr3 (1-104)||(27033655-27033758)
chr3 (1-111)||(2229987-2230097)
chr3 (1-108)||(19830395-19830502)
chr3 (1-105)||(34373835-34373939)
chr3 (4-108)||(40851781-40851885)
chr3 (1-92)||(12402970-12403061)
chr3 (11-108)||(24754671-24754768)
chr3 (11-108)||(24763668-24763765)
chr3 (1-98)||(34373559-34373656)
chr3 (1-108)||(48084823-48084931)
chr3 (21-99)||(550790-550867)
chr3 (1-70)||(31523670-31523739)
chr3 (21-100)||(566746-566825)
chr3 (64-108)||(24647905-24647949)
chr3 (1-66)||(42613084-42613149)
chr3 (1-70)||(49679272-49679341)
[»] chr6 (20 HSPs)
chr6 (1-108)||(4804452-4804559)
chr6 (1-108)||(1249112-1249217)
chr6 (1-108)||(17944166-17944273)
chr6 (1-113)||(12412641-12412753)
chr6 (1-104)||(7162088-7162191)
chr6 (1-108)||(13089713-13089820)
chr6 (1-108)||(21159333-21159440)
chr6 (1-108)||(27826542-27826649)
chr6 (21-108)||(227527-227615)
chr6 (28-108)||(1516171-1516250)
chr6 (28-108)||(1518260-1518339)
chr6 (37-108)||(32737897-32737968)
chr6 (1-70)||(24484883-24484952)
chr6 (1-108)||(7215816-7215923)
chr6 (1-57)||(29698167-29698223)
chr6 (33-108)||(1515506-1515580)
chr6 (1-108)||(2800575-2800682)
chr6 (48-111)||(30460875-30460937)
chr6 (5-70)||(7545645-7545711)
chr6 (1-92)||(13888502-13888594)
[»] chr1 (21 HSPs)
chr1 (1-108)||(50294027-50294134)
chr1 (1-108)||(50484390-50484497)
chr1 (1-104)||(12151771-12151874)
chr1 (21-104)||(48327122-48327205)
chr1 (1-108)||(23861916-23862026)
chr1 (37-108)||(45978045-45978116)
chr1 (45-108)||(12380841-12380904)
chr1 (45-108)||(12384908-12384971)
chr1 (5-67)||(24977248-24977310)
chr1 (22-108)||(32361271-32361357)
chr1 (23-100)||(7840651-7840728)
chr1 (1-70)||(30077646-30077715)
chr1 (1-108)||(18976268-18976376)
chr1 (1-70)||(52280041-52280110)
chr1 (21-108)||(40328302-40328386)
chr1 (1-104)||(39426214-39426317)
chr1 (1-54)||(12380928-12380981)
chr1 (1-54)||(12384995-12385048)
chr1 (1-104)||(26860019-26860121)
chr1 (1-67)||(32887785-32887851)
chr1 (1-70)||(5047383-5047452)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-108)||(16361-16468)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-108)||(208067-208174)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-104)||(9169-9272)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-108)||(7151-7262)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-108)||(22407-22513)
[»] scaffold0006 (1 HSPs)
scaffold0006 (37-108)||(73821-73892)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-67)||(17311-17377)
[»] scaffold0664 (1 HSPs)
scaffold0664 (5-70)||(4702-4768)
[»] scaffold0456 (1 HSPs)
scaffold0456 (47-104)||(13730-13787)
[»] scaffold0009 (1 HSPs)
scaffold0009 (24-92)||(6415-6483)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 117 - 354
Target Start/End: Complemental strand, 24764026 - 24763781
Alignment:
Q  117 ggagagaacataagaaaatgttataggtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaagaacaactgttcga 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  24764026 ggagataacataagaaaatgttataggtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaggaacaactgtttga 24763927  T
Q  217 ttga--------ttccctaatttccaattaagtgaacttgatatgtacttaatgatagatagactaagattattccctttttcttcaaaataaatagaat 308  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  24763926 ttgagcaaaagtttccctaatttccaattaagtgaacttgatatgtacttaatgatgtatagactaagattattccctttttcttcaaaataaatagaac 24763827  T
Q  309 ctcccagctttgagaatgattcaattcctaatcacaaaggaaaaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24763826 ctcccagctttgagaatgattcaattcctaatcacaaaggaaaaat 24763781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 130 - 354
Target Start/End: Complemental strand, 24731766 - 24731534
Alignment:
Q  130 gaaaatgttataggtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaagaacaactgttcgattga--------t 221  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||| | ||||||||  ||||||||||  || |||        |    
T  24731766 gaaaatgtaataggtacctcattaggagaaaaggtaaatgtcactcgtaggtaagggtccgatgaagcagccggaacaactgtctgagtgagcaaaattt 24731667  T
Q  222 tccctaatttccaattaagtgaacttgatatgtacttaatgatagatagactaagattattccctttttcttcaaaataaatagaatctcccagctttga 321  Q
    ||||  |||||||||||| ||| |||||||| |||| ||||||  |||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||    
T  24731666 tcccagatttccaattaaatgagcttgatatatactgaatgatgtatagactaggattatgcccttcttcttcaaaatatatagaatctcccagctttga 24731567  T
Q  322 gaatgattcaattcctaatcacaaaggaaaaat 354  Q
    ||||||||||||||||||| |||||||||||||    
T  24731566 gaatgattcaattcctaatgacaaaggaaaaat 24731534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 24692316 - 24692102
Alignment:
Q  143 gtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaagaacaactgttcgattga--------ttccctaatttcca 234  Q
    |||||||||||| ||||||  ||||||||||||| |||||||||||| ||||||| ||  ||||||||||  |  |||        |||||  |||||||    
T  24692316 gtacctcattagaagagaaggtaaatgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgggtgagcaatgttttcccagatttcca 24692217  T
Q  235 attaagtgaacttgatatgtacttaatgatagatagactaagattattccctttttcttcaaaataaatagaatctcccagctttgagaatgattcaatt 334  Q
    ||||| ||| |||||||| |||| ||||||  |||||||| || |||||||||  ||||||||||| || ||||||||||||||||||||||||||||||    
T  24692216 attaaatgagcttgatatatactgaatgatgtatagactaggactattcccttcctcttcaaaatagatggaatctcccagctttgagaatgattcaatt 24692117  T
Q  335 cctaatcacaaagga 349  Q
    |||||| ||||||||    
T  24692116 cctaatgacaaagga 24692102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 346
Target Start/End: Complemental strand, 24722997 - 24722881
Alignment:
Q  230 ttccaattaagtgaacttgatatgtacttaatgatagatagactaagattattccctttttcttcaaaataaatagaatctcccagctttgagaatgatt 329  Q
    |||||||||| ||| ||||||||||||| ||||||  |||||||| |||  ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  24722997 ttccaattaaatgagcttgatatgtactgaatgatgtatagactacgatgtttcccttcttcttcaaaatagatagaatctcccagctttgagaatgatt 24722898  T
Q  330 caattcctaatcacaaa 346  Q
    |||||||||||||||||    
T  24722897 caattcctaatcacaaa 24722881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34778425 - 34778532
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||||    
T  34778425 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatg 34778524  T
Q  101 gagaggat 108  Q
    ||||||||    
T  34778525 gagaggat 34778532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19901989 - 19901882
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||  ||||||    
T  19901989 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 19901890  T
Q  101 gagaggat 108  Q
    ||||||||    
T  19901889 gagaggat 19901882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24073620 - 24073727
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| | ||||  ||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  24073620 taattaatgatggcgggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaacttacaaatctccatttattttgccaaatg 24073719  T
Q  101 gagaggat 108  Q
    | ||||||    
T  24073720 gggaggat 24073727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 56558283 - 56558390
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||| ||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  56558283 taattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 56558382  T
Q  101 gagaggat 108  Q
    ||||||||    
T  56558383 gagaggat 56558390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 23610649 - 23610753
Alignment:
Q  4 ttaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggag 103  Q
    |||||||| ||||||  |||||||||||| || ||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  23610649 ttaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggag 23610748  T
Q  104 aggat 108  Q
    |||||    
T  23610749 aggat 23610753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5416536 - 5416430
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| |||| || ||||||| || |||||||||||||||||| |||| |||||||||||||||||||||    
T  5416536 taattaatgatggtgggacccacttagtggtaggacccacaatctattttt-gtgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 5416438  T
Q  101 gagaggat 108  Q
    ||||||||    
T  5416437 gagaggat 5416430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12312547 - 12312439
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgta-tctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||  ||||||||||||||||||||||| |||||||| |  |||||||||||||||||| |||| |||||||||||||| |||||    
T  12312547 taattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaacttgcaaaactccatttattttgccaaat 12312448  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  12312447 ggagaggat 12312439  T

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Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3952241 - 3952134
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||| ||  ||||||||||||||| ||||||| |||||||| | |||||||||||||||||| | || |||||||||||||| ||||||    
T  3952241 taattaatgatggtgagacccacttagtggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatg 3952142  T
Q  101 gagaggat 108  Q
    ||||||||    
T  3952141 gagaggat 3952134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5763233 - 5763126
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||  ||| |||||| ||||||| |||||     
T  5763233 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctctctccaacttgtaaaactccatatattttgccaaatt 5763134  T
Q  101 gagaggat 108  Q
    ||||||||    
T  5763133 gagaggat 5763126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18207111 - 18207004
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  ||||||||||||||| ||||||| |||||||| | |||||||||||| ||||| |||| || ||||||||||||||||||    
T  18207111 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttttgtctatctctctctaacttgcaaaactacatttattttgtcaaatg 18207012  T
Q  101 gagaggat 108  Q
    ||||||||    
T  18207011 gagaggat 18207004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 52018794 - 52018874
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||    
T  52018794 tggtgggatccactatttattttttgtatctatctctctccaacttgcaaaactccatttattttgctaaatggagaggat 52018874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30567905 - 30568008
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  ||| |  ||||||||||||||| ||||||| |||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||||    
T  30567905 taattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatg 30568004  T
Q  101 gaga 104  Q
    ||||    
T  30568005 gaga 30568008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33247201 - 33247094
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  || |||||||||| | ||||||| ||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  33247201 taattaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 33247102  T
Q  101 gagaggat 108  Q
    ||||||||    
T  33247101 gagaggat 33247094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 33524313 - 33524373
Alignment:
Q  48 tttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  33524313 tttttgtatctatctctctccaacttccaaatctccatttattttgccaaatggagaggat 33524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33262623 - 33262516
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||   | |||||||||||||||||||| |||||||||| |||||||||||| ||||| |||| | | |||||||||| |||||     
T  33262623 taattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctctctctaacttgcaaaacacaatttattttgccaaata 33262524  T
Q  101 gagaggat 108  Q
    ||||||||    
T  33262523 gagaggat 33262516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 38079791 - 38079684
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  |||||||| |||||| ||||||| ||||| |||| |||||||||||| ||||  |||| ||||||||||||||| |||||    
T  38079791 taattaatgatggtggaatccacttagtagtaggacccaccatctatttcttgtgtctatctctctcaaactagcaaaactccatttattttgttaaatg 38079692  T
Q  101 gagaggat 108  Q
    ||||||||    
T  38079691 gagaggat 38079684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 12153185 - 12153265
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||| ||| ||||||| || ||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  12153185 tggtgggacccaccatctaatttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggat 12153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39862521 - 39862628
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| | ||| |||||| |||||  |||||| |||||||||| |||||||||||| ||||| ||||  || ||||||||| |||||||    
T  39862521 taattaatgatggtggaactcatttagtgataggacacaccatctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatg 39862620  T
Q  101 gagaggat 108  Q
    ||||||||    
T  39862621 gagaggat 39862628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 56269147 - 56269078
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  56269147 taattaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctctctccaa 56269078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1871281 - 1871387
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  |||||||| ||||||||||| || ||| |||| | ||||||||||||||| || || | ||||||||||||||||||||     
T  1871281 taattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcata-ctccatttattttgtcaaatt 1871379  T
Q  101 gagaggat 108  Q
    ||||||||    
T  1871380 gagaggat 1871387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 24723145 - 24723059
Alignment:
Q  126 ataagaaaatgttataggtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaagaacaactgt 212  Q
    |||||||||||| ||||||||| || ||||||||||  |||||||| |||||||| |||||||| |||||| |||  ||||||||||    
T  24723145 ataagaaaatgtaataggtaccgcagtaggagagaaggtaaatgtcgctcgtaggaaagggtccgacgaagaagctggaacaactgt 24723059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 47922418 - 47922330
Alignment:
Q  21 cacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||||||| ||||||| |||| |||||| ||||| ||||||||| || |||| ||| |||||||||  ||||||||||||||    
T  47922418 cacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagaggat 47922330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37002322 - 37002253
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||  |||||||||||| ||||||||||| ||||||||| |||||    
T  37002322 taattaatgatggtgggacccacttagtaataggatccaccacttattttttgtgtctatctctttccaa 37002253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42010121 - 42010190
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  || |||||| ||||| || ||| |||||||||||||||||||||||||||    
T  42010121 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtatctatctctctccaa 42010190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23474115 - 23474226
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||||| ||||| | | |||||| ||||||| |||||| ||| |||||||||| |||| || || | ||||||||||| ||  |||||    
T  23474115 taattaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctctccccaaattgcata-ctccatttattatgctaaatg 23474213  T
Q  101 gagaggatgttta 113  Q
    |||||||| ||||    
T  23474214 gagaggatcttta 23474226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 32146510 - 32146576
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttt-ttgtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  32146510 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtatctatctctctccaa 32146576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5524451 - 5524520
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  |||||| || ||||| |||||| ||||||||| | |||||||||||||||    
T  5524451 taattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctctctccaa 5524520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36688259 - 36688190
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| |||||  || || ||||||||||| |||||||||||||||    
T  36688259 taattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaa 36688190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 25219003 - 25219077
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttttt--gtatctatctctctccaacttacaa 77  Q
    ||||||| ||||||  ||||||||| ||||| |||||| |||||||||  || ||||||||||||||| ||||||    
T  25219003 taatgatggtgggatccacttagtgataggacccaccacttattttttttgtgtctatctctctccaaattacaa 25219077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31862291 - 31862249
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccat 43  Q
    ||||||||||| ||||||  |||||||||||||||||||||||    
T  31862291 taattaatgatggtgggacccacttagtggtaggatccaccat 31862249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 56453891 - 56453822
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    |||| |||||| ||||||  |||||| || ||||| ||||||  |||||||||| |||||||||||||||    
T  56453891 taatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaa 56453822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 49811509 - 49811537
Alignment:
Q  80 ctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||||||||||||||||||||    
T  49811509 ctccatttattttgtcaaatggagaggat 49811537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9559125 - 9559018
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9559125 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatg 9559026  T
Q  101 gagaggat 108  Q
    ||||||||    
T  9559025 gagaggat 9559018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 4888471 - 4888578
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||   |||||||||||||| |||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4888471 taattaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatg 4888570  T
Q  101 gagaggat 108  Q
    ||||||||    
T  4888571 gagaggat 4888578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16366522 - 16366629
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| ||||| || | |||||||||||||||||| |||| |||||||||||||||||||||    
T  16366522 taattaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatg 16366621  T
Q  101 gagaggat 108  Q
    ||||||||    
T  16366622 gagaggat 16366629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21151156 - 21151263
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||||||||||||||| |||| ||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  21151156 taattaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 21151255  T
Q  101 gagaggat 108  Q
    ||||||||    
T  21151256 gagaggat 21151263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 44647988 - 44648075
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  44647988 cacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggat 44648075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 45260498 - 45260391
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  |||||||||||||||||||| || |||||||||| |||||||||||||||||| |||| ||| |||||||||| ||||||    
T  45260498 taattaatgatgatgggatccacttagtggtaggatccacaatctattttttgtgtctatctctctccaacttgcaaaactcaatttattttgccaaatg 45260399  T
Q  101 gagaggat 108  Q
    ||||||||    
T  45260398 gagaggat 45260391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7362572 - 7362676
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  || ||||||||| || ||||||| |||||||||| ||||||||||||||| || |||| |||||||||||||||||||||    
T  7362572 taattaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatg 7362671  T
Q  101 gagag 105  Q
    |||||    
T  7362672 gagag 7362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18198260 - 18198367
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||||| ||||||||||| || | ||||||| |||||||||| ||||| | ||||||| || |||| |||||||||||||| ||||||    
T  18198260 taattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctatttatctccaatttgcaaaactccatttattttgccaaatg 18198359  T
Q  101 gagaggat 108  Q
    ||||||||    
T  18198360 gagaggat 18198367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25084799 - 25084690
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgt--caaa 98  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||  |||| |||| |  ||||    
T  25084799 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttacaaaactttatttttttttttccaaa 25084700  T
Q  99 tggagaggat 108  Q
    ||||||||||    
T  25084699 tggagaggat 25084690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47226145 - 47226040
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || |||||||| ||| |||||||  ||||||||| | |||||||||||||||| |||| |||||||||||||| ||||||    
T  47226145 taattaatgatggtgggacccatttagtggtgggacccaccat--attttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatg 47226048  T
Q  101 gagaggat 108  Q
    ||||||||    
T  47226047 gagaggat 47226040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 989154 - 989239
Alignment:
Q  22 acttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||||| |||| || |||||||||| ||||||||||||||| || |||| ||||||||| |||||||||||||||||||    
T  989154 acttagtggtaggacccactatatattttttgtgtctatctctctccaaattgcaaa-ctccatttaatttgtcaaatggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12139330 - 12139435
Alignment:
Q  1 taattaatgattgtgggagtc-acttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    ||||||||||| ||||||  | ||||| |||||||| ||||||| |||||||||| |||||||||||||||||| |||| || ||||||||||| |||||    
T  12139330 taattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatttattttgccaaat 12139429  T
Q  100 ggagag 105  Q
    | ||||    
T  12139430 gaagag 12139435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33450510 - 33450618
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||  ||||||||||| ||| ||||||| |||| |||||| ||||||||||||||| || |||| ||| |||||||||  |||||    
T  33450510 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 33450609  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  33450610 ggagaggat 33450618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39855884 - 39855781
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  ||||||||||||||| | ||||| | |||| ||| ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  39855884 taattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaa-ctccatttaatttgtcaaatg 39855786  T
Q  101 gagag 105  Q
     ||||    
T  39855785 aagag 39855781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47500354 - 47500246
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||  ||||||||||| ||| ||||||| |||| |||||| ||||||||||||||| ||||||| ||| |||||||||   ||||    
T  47500354 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattacaaaactcaatttattttagtaaat 47500255  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  47500254 ggagaggat 47500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32915960 - 32916025
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctct 66  Q
    ||||| ||||| |||||| ||||||| |||||||| |||| ||||||||||||| |||||||||||    
T  32915960 taattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctctct 32916025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47799971 - 47799902
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| ||| || ||||||||||| |||||||||||||||    
T  47799971 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaa 47799902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 34986017 - 34985909
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  ||||| ||| ||||||||  || ||||||| |||| |||||| ||||||||||||||| || |||| ||| |||||||||  |||||    
T  34986017 taattaatgatgatgggactcatttagtggtttgacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 34985918  T
Q  100 ggagaggat 108  Q
     ||||||||    
T  34985917 tgagaggat 34985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 19027751 - 19027685
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||||||||| |||||| |||||||||||||||    
T  19027751 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaa 19027685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 20726885 - 20726951
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccattta-ttttttgtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||||||| |||||||| |||||||||||||||    
T  20726885 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaa 20726951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 47271173 - 47271112
Alignment:
Q  46 attttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||| ||||||||||||||| || |||| ||||||||||||||  |||||||||||||    
T  47271173 attttttgtgtctatctctctccaaattgcaaa-ctccatttattttgctaaatggagaggat 47271112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19889105 - 19889042
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctct 64  Q
    ||||||||||| |||| |  ||||||||| ||||| |||| | |||||||||||||||||||||    
T  19889105 taattaatgatggtggaacccacttagtgataggacccacaacttattttttgtatctatctct 19889042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 14696825 - 14696759
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttttt-gtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| ||||||||| || |||||||||||||||    
T  14696825 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaa 14696759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28528555 - 28528624
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| |||||| || ||||||| |||||  ||||| || |||||| | |||||||||||||||    
T  28528555 taattaatgatggtgggattcgcttagtgataggactcaccacttgttttttttgtctatctctctccaa 28528624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 35316829 - 35316936
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  35316829 taattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 35316928  T
Q  101 gagaggat 108  Q
    ||||||||    
T  35316929 gagaggat 35316936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13238685 - 13238792
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||| ||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  13238685 taattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 13238784  T
Q  101 gagaggat 108  Q
    ||||||||    
T  13238785 gagaggat 13238792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28564896 - 28565003
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  28564896 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctacaacttaaaaaactccatttattttgccaaatg 28564995  T
Q  101 gagaggat 108  Q
    ||||||||    
T  28564996 gagaggat 28565003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23259558 - 23259451
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||||| |||||| ||||||  |||||||||| |||||||||||||||||| |||| | |||||||||||| ||||||    
T  23259558 taattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaacttgcaaaacaccatttattttgccaaatg 23259459  T
Q  101 gagaggat 108  Q
    ||||||||    
T  23259458 gagaggat 23259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 45625123 - 45625043
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||| ||| |||| |||||||| |||| ||||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  45625123 tggtgggacccacaatttatttcttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggat 45625043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 11864917 - 11864980
Alignment:
Q  45 tattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||| ||||||||||||||||||  ||| ||||||||||||||  |||||||||||||    
T  11864917 tattttttgtgtctatctctctccaacttgtaaaactccatttattttgataaatggagaggat 11864980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 2063359 - 2063464
Alignment:
Q  3 attaatgattgtgggagtcacttagtggtaggatcca-ccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatgg 101  Q
    ||||||||| |||| |  ||||| ||||||||| | | |||| |||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||     
T  2063359 attaatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctctctccaaattgcaaa-ctctatttattttgtcaaatga 2063457  T
Q  102 agaggat 108  Q
    |||||||    
T  2063458 agaggat 2063464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 374997 - 375066
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||  ||||| |||||| ||||||||||| |||||||||||||||    
T  374997 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaa 375066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 4446944 - 4446860
Alignment:
Q  24 ttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||||||||| || |||||| ||| ||||||||||| ||| ||  | |  |||||||||||| |||||||||||||||    
T  4446944 ttagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggat 4446860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 28029834 - 28029905
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaa 77  Q
    ||||||| |||||| ||| |||||| ||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  28029834 taatgatagtgggattcatttagtgataggatccaccattt-ttttttttgtctatctctcttcaacttacaa 28029905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 36758932 - 36758821
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||||||| |  ||| ||  | |||||||||||| ||| ||||||| ||||||||||||||| || ||| | ||||||||||||   |||||    
T  36758932 taattaatgattgtggaacccacctaaagataggatccaccacttactttttgtgtctatctctctccaaattgcaact-tccatttatttttataaatg 36758834  T
Q  101 gagaggatgttta 113  Q
    |||||||| ||||    
T  36758833 gagaggatcttta 36758821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 40640709 - 40640781
Alignment:
Q  37 ccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| |||| |||||||| ||||||||||||| || |||| |||||||||||||  ||||||||||||||    
T  40640709 ccaccatctattcttttgtatatatctctctccaaattgcaaaactccatttattttaacaaatggagaggat 40640781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 30857749 - 30857643
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||| ||  || ||| | ||||||||||  || |||||||||| |||| |||||| ||| ||||| | ||||||||||||||| |||||    
T  30857749 taattaatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtctacctctcttcaaattacata-ctccatttattttgtgaaatg 30857651  T
Q  101 gagaggat 108  Q
    ||||||||    
T  30857650 gagaggat 30857643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8988859 - 8988928
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| | | || ||||||||||| |||||||||||||||    
T  8988859 taattaatgatggtgggacccacttagtgataggacctatcacttattttttgtgtctatctctctccaa 8988928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23459917 - 23459848
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  || |||||| ||||| || ||| ||||||||||| |||||||||||||||    
T  23459917 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaa 23459848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 30709115 - 30709183
Alignment:
Q  2 aattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    |||||||||| ||||||  ||||||||||||||| |||  || |||||| ||| |||||||||||||||    
T  30709115 aattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctctctccaa 30709183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 38824065 - 38824121
Alignment:
Q  37 ccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttatttt 92  Q
    |||||||||||| |||| | ||||||||||||||| ||||||| |||||||||||||    
T  38824065 ccaccatttattcttttttgtctatctctctccaaattacaaaactccatttatttt 38824121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3594865 - 3594931
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccattta-ttttttgtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| |||||||||||| ||| |||||| | |||||||||||||||    
T  3594865 taatgatggtgggatccacttagtgataggatccaccacttatttttttttgtctatctctctccaa 3594931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13780506 - 13780572
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttttt-gtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| ||||||||| || |||||||||||||||    
T  13780506 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaa 13780572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 41435255 - 41435205
Alignment:
Q  21 cacttagtggtaggatccaccattta-ttttttgtatctatctctctccaa 70  Q
    ||||||||| |||||||||||| ||| |||||||| |||||||||||||||    
T  41435255 cacttagtgataggatccaccacttatttttttgtgtctatctctctccaa 41435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 3354824 - 3354775
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaa 77  Q
    |||| ||| |||||| ||||||||||| ||||||||||||||| ||||||    
T  3354824 tggtgggacccaccacttattttttgtgtctatctctctccaaattacaa 3354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 32009967 - 32009939
Alignment:
Q  80 ctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||||||||||||||||||||    
T  32009967 ctccatttattttgtcaaatggagaggat 32009939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28069723 - 28069830
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||    
T  28069723 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatg 28069822  T
Q  101 gagaggat 108  Q
    ||||||||    
T  28069823 gagaggat 28069830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10672583 - 10672481
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||  |||||||||||| |||| |||||||||||||| ||||||    
T  10672583 taattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtcta--tctctccaacttgcaaaactccatttattttgccaaatg 10672486  T
Q  101 gagag 105  Q
    |||||    
T  10672485 gagag 10672481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30426740 - 30426635
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| | |||||||||||| ||||||    
T  30426740 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacaccatttattttgccaaatg 30426641  T
Q  101 gagagg 106  Q
    ||||||    
T  30426640 gagagg 30426635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36991360 - 36991467
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||| ||| ||||| || | |||||||||||||||||| |||| |||||||||||||| ||||||    
T  36991360 taattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatg 36991459  T
Q  101 gagaggat 108  Q
    ||||||||    
T  36991460 gagaggat 36991467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 44859238 - 44859133
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||| | ||||||| ||||||| ||  ||||||||||| ||||| |||| ||||||||||||||||||||     
T  44859238 taattaatgatggtgggacccacttagtggtagaacccaccatctatttttagt--ctatctctctctaacttgcaaaactccatttattttgtcaaata 44859141  T
Q  101 gagaggat 108  Q
    ||||||||    
T  44859140 gagaggat 44859133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10652688 - 10652581
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || ||||| ||| || |||||||  |||||||||||||||||||||||||||| |||| | |||||||||||  ||||||    
T  10652688 taattaatgatggtgggacccaattagtagtatgacccaccatcaattttttgtatctatctctctccaacttgcaaaacaccatttattttaccaaatg 10652589  T
Q  101 gagaggat 108  Q
    ||||||||    
T  10652588 gagaggat 10652581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 40695314 - 40695216
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggaga 104  Q
    ||||||| |||| | |||||||||||||||| | ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  40695314 taatgatggtggaactcacttagtggtaggacctaccatctattttttgtgtctatctctctccaacttccaaa-ctccatttattttgctaaatggaga 40695216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41511266 - 41511373
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  ||||||||| ||||| |||| || |||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||| |    
T  41511266 taattaatgatggtggaaaccacttagtgataggacccactatctattttttatatctatctctttccaacttgcaaaactccatttattttgttaaacg 41511365  T
Q  101 gagaggat 108  Q
    ||||||||    
T  41511366 gagaggat 41511373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24102020 - 24102085
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctct 66  Q
    ||||||||||| |||| | |||||||||||||||||||||||| |||||||| | |||||||||||    
T  24102020 taattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatctctct 24102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 12177625 - 12177575
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaa 78  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  12177625 tggtgggatccaccatctattttttgtatctatctctctccaacttgcaaa 12177575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 12422053 - 12422003
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaa 78  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  12422053 tggtgggatccaccatctattttttgtatctatctctctccaacttgcaaa 12422003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26749619 - 26749550
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| ||| || ||||||||||| |||||||||||||||    
T  26749619 taattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaa 26749550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 5033311 - 5033363
Alignment:
Q  56 tctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||| |||||    
T  5033311 tctatctctctccaacttgcaaaactccatttattttgccaaatggaaaggat 5033363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34612568 - 34612644
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaa 77  Q
    ||||||||||| ||| ||  ||||||||| ||||| |||||| ||||||||||| |||||||||||| || ||||||    
T  34612568 taattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctctctctaaattacaa 34612644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 37966491 - 37966408
Alignment:
Q  24 ttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||||| | || || |||||||||| | ||||||||| ||| || ||||| ||||||||||||| ||||||||||||||    
T  37966491 ttagtggtaggacctacaatctattttttgtgtttatctctcttcaaattgcaaat-tccatttattttgccaaatggagaggat 37966408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45113274 - 45113382
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||  ||||||||||| ||| ||||||| |||| |||||| ||||| ||||||||| || |||| | | |||||||||  |||||    
T  45113274 taattaatgatgatgggacacacttagtggttggacccaccatctattcttttgtgtctatgtctctccaaattgcaaaacacaatttattttagcaaat 45113373  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  45113374 ggagaggat 45113382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 5033108 - 5033150
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctc 63  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||    
T  5033108 cacttagtggtaggacccaccatctattttttgtgtctatctc 5033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 17867727 - 17867661
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttttt-gtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| ||||||||| || |||||||||||||||    
T  17867727 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaa 17867661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 6014218 - 6014306
Alignment:
Q  21 cacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||| |||||||| | | ||| |||| |||||| ||||||| ||||||| || |||| ||| |||||||||  ||||||||||||||    
T  6014218 cacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaatggagaggat 6014306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18625492 - 18625385
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||    
T  18625492 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatg 18625393  T
Q  101 gagaggat 108  Q
    ||||||||    
T  18625392 gagaggat 18625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35660680 - 35660573
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  35660680 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 35660581  T
Q  101 gagaggat 108  Q
    ||||||||    
T  35660580 gagaggat 35660573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11775797 - 11775904
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||  ||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||  ||||||    
T  11775797 taattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 11775896  T
Q  101 gagaggat 108  Q
    ||||||||    
T  11775897 gagaggat 11775904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 32129688 - 32129581
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| ||||||| || ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  32129688 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttgccaaatg 32129589  T
Q  101 gagaggat 108  Q
    ||||||||    
T  32129588 gagaggat 32129581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 37266735 - 37266842
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||||||||| || ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  37266735 taattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 37266834  T
Q  101 gagaggat 108  Q
    ||||||||    
T  37266835 gagaggat 37266842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4895806 - 4895699
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| |||||     
T  4895806 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaata 4895707  T
Q  101 gagaggat 108  Q
     |||||||    
T  4895706 aagaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14349807 - 14349914
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||  |||||     
T  14349807 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaacttacaaaactccatttattttaccaaata 14349906  T
Q  101 gagaggat 108  Q
    ||||||||    
T  14349907 gagaggat 14349914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13032122 - 13032229
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || ||||||||||||  |||||| ||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  13032122 taattaatgatggtgggacccatttagtggtaggactcaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 13032221  T
Q  101 gagaggat 108  Q
    ||||||||    
T  13032222 gagaggat 13032229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34827196 - 34827299
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||| ||| ||||||  ||||||||||||||||||||||| |||||||| | |||||||||||||||||| || | ||||||||||||||  |||||    
T  34827196 taattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttattttgctaaatg 34827295  T
Q  101 gaga 104  Q
    ||||    
T  34827296 gaga 34827299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 40753233 - 40753126
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||||| |||||||||| |||| ||  |||||||||| |||||     
T  40753233 taattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatctttctccaacttgcaaaactttatttattttgccaaata 40753134  T
Q  101 gagaggat 108  Q
    ||||||||    
T  40753133 gagaggat 40753126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 39902419 - 39902525
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  || |||||||||||| ||||||| ||||| |||| | ||||||||||||||||  ||| |||||||||||||||||||||    
T  39902419 taattaatgatggtggaatccatttagtggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatg 39902518  T
Q  101 gagagga 107  Q
    |||||||    
T  39902519 gagagga 39902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3057225 - 3057135
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttatttt 92  Q
    |||||||||||| || || ||||||| |||||||||||||||| |||||||||| | ||||||| ||||| || ||||| ||||||||||||    
T  3057225 taattaatgattatgtgactcacttaatggtaggatccaccatctattttttgtgtttatctctatccaaattgcaaat-tccatttatttt 3057135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 43309113 - 43309219
Alignment:
Q  2 aattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatgg 101  Q
    |||||||||| |||| |  || ||| ||||| ||||||| || |||||||| | |||||||||||||||||| |||| ||||||||||||| ||||||      
T  43309113 aattaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataa 43309212  T
Q  102 agaggat 108  Q
    |||||||    
T  43309213 agaggat 43309219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36290606 - 36290675
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| |||||| ||||||||||| |||||||||||||||    
T  36290606 taattaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctctctccaa 36290675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8441042 - 8440943
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||||||||| |   |||||| ||||||| || |||||||  ||||||||| |||| |||||||||||||| ||||||    
T  8441042 taattaatgatggtgggacacacttagtggtatgtcgcaccatctatttttggtgtctatctacctccaacttgcaaaactccatttattttgccaaatg 8440943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29340999 - 29341110
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||| | |||||| |||| || |||||| ||| ||||||||||||||| || || | ||||||||||| |  ||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcata-ctccatttattataccaaatg 29341097  T
Q  101 gagaggatgttta 113  Q
    |||||||| ||||    
T  29341098 gagaggatcttta 29341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2984461 - 2984385
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaa 77  Q
    ||||||||||| ||||||  || |||||| |||||| || || ||||||| ||| ||||||||||||||| ||||||    
T  2984461 taattaatgatggtgggacccatttagtgataggattcatcacttattttatgtgtctatctctctccaaattacaa 2984385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3041379 - 3041309
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatttttt-gtatctatctctctccaa 70  Q
    ||||||||||| ||||||  | ||||||| ||||| |||||| || |||||| ||||||||||||||||||    
T  3041379 taattaatgatggtgggacccgcttagtgataggacccaccacttgtttttttgtatctatctctctccaa 3041309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4592804 - 4592857
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgt 54  Q
    ||||||||||| ||||||  |||||||||||| || ||||||| ||||||||||    
T  4592804 taattaatgatggtgggacccacttagtggtaagacccaccatctattttttgt 4592857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41660110 - 41660179
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||| ||||| |  || |||||| ||||||||||| |||||||||||||||    
T  41660110 taattaatgatggtgggacccacctagtgatgagacccaccacttattttttgtgtctatctctctccaa 41660179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 18653384 - 18653471
Alignment:
Q  20 tcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| |||||| |  ||| || |||||||||| ||||||||||| ||| || |||| |||||||||||||| ||| | ||||||||    
T  18653384 tcacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattgcaaa-ctccatttattttgacaatttgagaggat 18653471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32316570 - 32316509
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctct 66  Q
    ||||| |||||||||||| |||||||||||||| ||||||    || ||||||| |||||||||||    
T  32316570 taatttatgattgtgggactcacttagtggtagaatccac----tagtttttgtgtctatctctct 32316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 43720018 - 43719911
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||    
T  43720018 taattaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatg 43719919  T
Q  101 gagaggat 108  Q
    ||||||||    
T  43719918 gagaggat 43719911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 46167417 - 46167507
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggatgtt 111  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  46167417 cacttagtggtaggacccaccatatattttttgtgtctatctctctccaacttacaaaactccatttattttgctaaatggagaggatgtt 46167507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27033655 - 27033758
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| |||| ||||||||||||| |||||||    
T  27033655 taattaatgatggtgggatccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 27033754  T
Q  101 gaga 104  Q
    ||||    
T  27033755 gaga 27033758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2229987 - 2230097
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  ||||||||||||||| ||| ||| |||||||||| |||||||||||||||||| |||| ||||| |||||||| ||||||    
T  2229987 taattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccaattattttgccaaatg 2230086  T
Q  101 gagaggatgtt 111  Q
    |||||||||||    
T  2230087 gagaggatgtt 2230097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19830502 - 19830395
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||| |||||||| ||||||| |||||||||| ||||| |||| ||||||| |||| |||||||||||||| ||||||    
T  19830502 taattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttgccaaatg 19830403  T
Q  101 gagaggat 108  Q
    ||||||||    
T  19830402 gagaggat 19830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 34373835 - 34373939
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||   | |||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| | | |||||||||| ||||||    
T  34373835 taattaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacacaatttattttgccaaatg 34373934  T
Q  101 gagag 105  Q
    |||||    
T  34373935 gagag 34373939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 40851781 - 40851885
Alignment:
Q  4 ttaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggag 103  Q
    |||||||| || |||  ||||||||||| | | ||||||| |||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| |||    
T  40851781 ttaatgatggtaggacccacttagtggttgaacccaccatctattttttgtgtctatctttctccaacttgcaaaactccatttattttgtcaaattgag 40851880  T
Q  104 aggat 108  Q
    |||||    
T  40851881 aggat 40851885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 12402970 - 12403061
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttatttt 92  Q
    |||||||| || |||||| |||||||||||||| ||||||||| || ||||| |||||||||||||||||||| |||| ||| |||||||||    
T  12402970 taattaataatggtgggactcacttagtggtagaatccaccatctaatttttatatctatctctctccaacttgcaaaactctatttatttt 12403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 24754671 - 24754768
Alignment:
Q  11 ttgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||  |||||||||||||||   ||||| |||||| ||| ||||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  24754671 ttgtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggat 24754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 24763668 - 24763765
Alignment:
Q  11 ttgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||  |||||||||||||||   ||||| |||||| ||| ||||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  24763668 ttgtgggacccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggat 24763765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34373656 - 34373559
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaa 98  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| ||||||| || ||||||||| |  ||||| |||| ||| |||||||||| ||||    
T  34373656 taattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctctatggaacttgcaaaactctatttattttgccaaa 34373559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 48084823 - 48084931
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||  ||||||||||| ||| ||||||| |||| |||||| |||||||||| |||| || |||| ||| |||||||||  |||||    
T  48084823 taattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttattttagcaaat 48084922  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  48084923 ggagaggat 48084931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 550867 - 550790
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||| || ||||||||||||| |||||||||||| ||||| ||||||| || |||| |||||||||||||| |||||    
T  550867 cacttaatgataggatccaccatctattttttgtatatatctttctccaaattgcaaa-ctccatttattttgccaaat 550790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31523739 - 31523670
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||  ||||| |||||| ||||||||||| |||||||||||||||    
T  31523739 taattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaa 31523670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 566825 - 566746
Alignment:
Q  21 cacttagtggtaggatccaccatttatttttt-gtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||| || |||||||| |||| |||||||| |||||||||||||||||| || |||| |||||||||||||| ||||||    
T  566825 cacttaatgataggatccgccatatatttttttgtatctatctctctccaaattgcaaa-ctccatttattttgccaaatg 566746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 24647905 - 24647949
Alignment:
Q  64 tctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  24647905 tctccaacttgcaaaactccatttattttgtcaaatggagaggat 24647949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42613084 - 42613149
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctct 66  Q
    ||||||||||| ||||||  ||||||||| ||||| |||||| ||||||||| | |||||||||||    
T  42613084 taattaatgatggtgggacccacttagtgataggacccaccacttattttttttgtctatctctct 42613149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 49679341 - 49679272
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  || |||||| ||||| || ||| ||||||||||| |||||||||||||||    
T  49679341 taattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaa 49679272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 4804452 - 4804559
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||  ||| |||||||||||||| ||||||    
T  4804452 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatg 4804551  T
Q  101 gagaggat 108  Q
    ||||||||    
T  4804552 gagaggat 4804559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1249217 - 1249112
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| ||||||||||  || ||||||||||||||||||| |||||||||||||| ||||||    
T  1249217 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgt--ctgtctctctccaacttacaaaactccatttattttgccaaatg 1249120  T
Q  101 gagaggat 108  Q
    ||||||||    
T  1249119 gagaggat 1249112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17944166 - 17944273
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || |||||||||||| | ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  17944166 taattaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctctctccaacttacaaaactccatttattttgccaaatg 17944265  T
Q  101 gagaggat 108  Q
     |||||||    
T  17944266 aagaggat 17944273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12412641 - 12412753
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  ||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  12412641 taattaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 12412740  T
Q  101 gagaggatgttta 113  Q
    |||| ||| ||||    
T  12412741 gagaagatcttta 12412753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7162088 - 7162191
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  |||||||| |||||| ||||||| ||||| |||| |||||||||||||||||| |||| ||||||||||||| |||||||    
T  7162088 taattaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatg 7162187  T
Q  101 gaga 104  Q
    ||||    
T  7162188 gaga 7162191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13089820 - 13089713
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||||   ||||||||||||||| ||||||| ||| |||||| |||||||||||||||||| |||| | |||||||||||| ||||||    
T  13089820 taattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaacttgcaaaacaccatttattttgccaaatg 13089721  T
Q  101 gagaggat 108  Q
    ||||||||    
T  13089720 gagaggat 13089713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21159440 - 21159333
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| ||||| |||||||||||| |||| || ||||||||||  ||||||    
T  21159440 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatttctctccaacttgcaaaacttcatttattttaacaaatg 21159341  T
Q  101 gagaggat 108  Q
    ||||||||    
T  21159340 gagaggat 21159333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27826542 - 27826649
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||| | ||| ||||||| || |||||||  ||||||    
T  27826542 taattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctcaaccttgcaaatcttcagttattttaccaaatg 27826641  T
Q  101 gagaggat 108  Q
    ||||||||    
T  27826642 gagaggat 27826649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 227615 - 227527
Alignment:
Q  21 cacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||||||| ||||||| |||| |||||| |||||||||||||||  | |||| |||||||||||||  ||||||||||||||    
T  227615 cacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaatggagaggat 227527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1516250 - 1516171
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||| ||||||||||| ||||||||||||| |||||||||||| || |||| |||||||||||||| |||||||| |||||    
T  1516250 tggtgggatccaccatctattttttgtatccatctctctccaaattgcaaa-ctccatttattttgccaaatggataggat 1516171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1518339 - 1518260
Alignment:
Q  28 tggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||| ||||||||||| ||||||||||||| |||||||||||| || |||| |||||||||||||| |||||||| |||||    
T  1518339 tggtgggatccaccatctattttttgtatccatctctctccaaattgcaaa-ctccatttattttgccaaatggataggat 1518260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 32737897 - 32737968
Alignment:
Q  37 ccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| |||||||||| |||||||||||||||| | |||| ||| |||||||||| ||||||||||||||    
T  32737897 ccaccatctattttttgtgtctatctctctccaacctgcaaaactctatttattttgccaaatggagaggat 32737968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24484883 - 24484952
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| |||||| ||||||||||| |||||||||||||||    
T  24484883 taattaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctctctccaa 24484952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7215923 - 7215816
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || |||||||||||| |||| || |||||| ||| ||||||||||||||| ||    |  |||||||||||| |||||||    
T  7215923 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatg 7215824  T
Q  101 gagaggat 108  Q
    ||||||||    
T  7215823 gagaggat 7215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29698167 - 29698223
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatc 57  Q
    ||||||||||| ||||||  |||||| |||||||||||||||| |||||||||||||    
T  29698167 taattaatgatggtgggacccacttaatggtaggatccaccatctattttttgtatc 29698223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 1515580 - 1515506
Alignment:
Q  33 ggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||| |||||||| |||| |||||||||||| || |||| |||||||||||||| ||||| || |||||    
T  1515580 ggatccaccatctattttttttatccatctctctccaaattgcaaa-ctccatttattttgccaaattgataggat 1515506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2800682 - 2800575
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||| |||||| ||||||  |||||| ||||| ||||||| || |||||| ||| ||||||||||||||| ||    || |||||| ||||| |||||||    
T  2800682 taatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatg 2800583  T
Q  101 gagaggat 108  Q
    ||||||||    
T  2800582 gagaggat 2800575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 30460875 - 30460937
Alignment:
Q  48 tttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggatgtt 111  Q
    ||||||| ||||||| ||||||| || |||| ||||||||||||||||||||||||| ||||||    
T  30460875 tttttgtgtctatctttctccaaattgcaaa-ctccatttattttgtcaaatggagatgatgtt 30460937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 7545645 - 7545711
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttattttttg-tatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| |||||||||| | |||||||||||||||    
T  7545645 taatgatagtgggatccacttagtgataggacccaccacttattttttggtgtctatctctctccaa 7545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13888594 - 13888502
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttatttt 92  Q
    |||||||||||  |||||  || ||| |||||||| ||||||| |||| |||||| | ||||||||||||| || |||| ||| |||||||||    
T  13888594 taattaatgatgatgggacccagttaatggtaggaaccaccatctattattttgtgtatatctctctccaaattgcaaaactctatttatttt 13888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 50294134 - 50294027
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| || |||  ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  50294134 taattaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 50294035  T
Q  101 gagaggat 108  Q
     |||||||    
T  50294034 aagaggat 50294027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 50484390 - 50484497
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||  ||||||  ||||||||||| | | ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  50484390 taattaatgacggtgggacccacttagtggttgtacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatg 50484489  T
Q  101 gagaggat 108  Q
    ||||||||    
T  50484490 gagaggat 50484497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12151771 - 12151874
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  ||||||||||||||| |||| || |||||||||| ||| |||||||||||||  |||| |||||||||||||| ||||||    
T  12151771 taattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctctctccaactggcaaaactccatttattttgccaaatg 12151870  T
Q  101 gaga 104  Q
    ||||    
T  12151871 gaga 12151874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 48327205 - 48327122
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggaga 104  Q
    |||||||||||||||  |||||| |||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  48327205 cacttagtggtaggactcaccatctattttttttgtctatctctctccaacttgcaaatctccatttattttgccaaatggaga 48327122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23862026 - 23861916
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggat---ccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaa 97  Q
    ||||||||||| ||||||  ||||||||||||||||   ||||||| |||||||||| |||||||||||||||||| |||| || |||||||||||  ||    
T  23862026 taattaatgatggtgggatccacttagtggtaggattcaccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatttattttgctaa 23861927  T
Q  98 atggagaggat 108  Q
    || ||||||||    
T  23861926 atagagaggat 23861916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 45978045 - 45978116
Alignment:
Q  37 ccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||    
T  45978045 ccaccatctattttttgtatctatctctctccaacttgcaaaactccatttattttatcaaatagagaggat 45978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 12380904 - 12380841
Alignment:
Q  45 tattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  12380904 tattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggat 12380841  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 12384971 - 12384908
Alignment:
Q  45 tattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  12384971 tattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggat 12384908  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 24977248 - 24977310
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctc 67  Q
    |||||||||||| |  ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  24977248 taatgattgtggaacccacttagtggtaggatccaccatctattttttgtgtctatctctctc 24977310  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 32361357 - 32361271
Alignment:
Q  22 acttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| |||||||||||||| ||| |||||| || |||||||||||||||||||| ||| | ||||||   ||||||||||||||    
T  32361357 acttagtagtaggatccaccatctatcttttgtgtccatctctctccaacttacaaaactctaattatttcaccaaatggagaggat 32361271  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 7840728 - 7840651
Alignment:
Q  23 cttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||| |||||||| ||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||||| || ||||||    
T  7840728 cttaatggtaggacccatcatctatttcttgtgtctatctctctccaacttacaaaactccatttattctgccaaatg 7840651  T

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Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30077715 - 30077646
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| |||||| |||||||||| ||| | |||||| ||||||||||| |||||||||||||||    
T  30077715 taattaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctctctccaa 30077646  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18976376 - 18976268
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttatt-ttttgtatctatctctctccaacttacaaatctccatttattttgtcaaat 99  Q
    |||||||||||  |||||   ||||| |||| ||||||||||| |||| |||||| ||||||||||||||| || |||| ||| |||||||||  |||||    
T  18976376 taattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaat 18976277  T
Q  100 ggagaggat 108  Q
    |||||||||    
T  18976276 ggagaggat 18976268  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52280110 - 52280041
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||||||||| ||||| |||||| ||||||||| | |||||||||||||||    
T  52280110 taattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctctctccaa 52280041  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 40328302 - 40328386
Alignment:
Q  21 cacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||||||| ||| ||||||| ||||||| || ||||||||||  ||| || |||| |||||||||||||| ||||||||||||||    
T  40328302 cacttagtggtgggacccaccatctattttt-gtgtctatctctc--caatttgcaaaactccatttattttgccaaatggagaggat 40328386  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39426214 - 39426317
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| ||||||  || |||||||||||| |||| || |||||| ||| ||||||||||||||| ||    |  |||||||||||| |||||||    
T  39426214 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 39426313  T
Q  101 gaga 104  Q
    ||||    
T  39426314 gaga 39426317  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12380981 - 12380928
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgt 54  Q
    ||||||||||| |||||| |||||||||||||| | ||||||| ||||||||||    
T  12380981 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgt 12380928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12385048 - 12384995
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgt 54  Q
    ||||||||||| |||||| |||||||||||||| | ||||||| ||||||||||    
T  12385048 taattaatgatggtgggactcacttagtggtagaacccaccatctattttttgt 12384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26860121 - 26860019
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||||||||||  ||||||||| ||||| | || || |||||| ||| ||||||||||| ||| |||   | ||||||||||||| ||||||     
T  26860121 taattaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctctcttcaaattatgta-ctccatttattttatcaaata 26860023  T
Q  101 gaga 104  Q
    ||||    
T  26860022 gaga 26860019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32887851 - 32887785
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctc 67  Q
    ||||||||||| ||||||  || ||| ||||||||||||| ||||||||| ||| ||||||| ||||    
T  32887851 taattaatgatggtgggacccatttaatggtaggatccactatttattttatgtgtctatctttctc 32887785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5047452 - 5047383
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaa 70  Q
    ||||||||||| ||||||  ||| |||||||||||||||  || |||||| || ||| ||||||||||||    
T  5047452 taattaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaa 5047383  T

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Target: scaffold0035 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 16468 - 16361
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| | || |    
T  16468 taattaatgatgatgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgcctaacg 16369  T
Q  101 gagaggat 108  Q
    ||||||||    
T  16368 gagaggat 16361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 208067 - 208174
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||||||  |||||  ||||||||||||||| ||||||| |||||||||| | |||||||||||||||| |||| |||||||||||||| ||||||    
T  208067 taattaatgatgatgggacccacttagtggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatg 208166  T
Q  101 gagaggat 108  Q
    ||||||||    
T  208167 gagaggat 208174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9272 - 9169
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    ||||||||||| |||| |  ||||||||||| ||| ||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  9272 taattaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaacttgcaaatctccatttattttgccaaatg 9173  T
Q  101 gaga 104  Q
    ||||    
T  9172 gaga 9169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7151 - 7262
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattt----tgtca 96  Q
    ||||||||||| |||| |  |||||| | |||||| ||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||    || ||    
T  7151 taattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttattttgcca 7250  T
Q  97 aatggagaggat 108  Q
    ||||||||||||    
T  7251 aatggagaggat 7262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22513 - 22407
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatg 100  Q
    |||||||| ||||||| | ||||||||||||||||||||| || |||||||||| ||||||||| |  || || |||| ||||||||||||||  |||||    
T  22513 taattaattattgtggaactcacttagtggtaggatccactatctattttttgtgtctatctctttgtaaattgcaaa-ctccatttattttgctaaatg 22415  T
Q  101 gagaggat 108  Q
     |||||||    
T  22414 cagaggat 22407  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 73892 - 73821
Alignment:
Q  37 ccaccatttattttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggagaggat 108  Q
    ||||||| ||| |||||  |||||||||||||||||| |||| | |||||||||||| ||||| ||||||||    
T  73892 ccaccatctatattttgcgtctatctctctccaacttgcaaaacaccatttattttgccaaatagagaggat 73821  T

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Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17377 - 17311
Alignment:
Q  1 taattaatgattgtgggagtcacttagtggtaggatccaccatttattttttgtatctatctctctc 67  Q
    ||||||||||| ||||||  ||||||||| ||||| ||| || ||||||||||| ||||||||||||    
T  17377 taattaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctctctc 17311  T

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Target: scaffold0664 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 4768 - 4702
Alignment:
Q  5 taatgattgtgggagtcacttagtggtaggatccaccatttatttttt-gtatctatctctctccaa 70  Q
    ||||||| ||||||  ||||||||| ||||| |||||| ||||||||| || |||||||||||||||    
T  4768 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaa 4702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 13730 - 13787
Alignment:
Q  47 ttttttgtatctatctctctccaacttacaaatctccatttattttgtcaaatggaga 104  Q
    |||||| | |||||||||||||||||  |||| ||| |||||||||| ||||||||||    
T  13730 ttttttttgtctatctctctccaactagcaaaactctatttattttgccaaatggaga 13787  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 6483 - 6415
Alignment:
Q  24 ttagtggtaggatccaccatttattttttgtatctatctctctccaacttacaaatctccatttatttt 92  Q
    ||||| |||||| ||||||| |||||||||| ||| ||||| |||||||| ||||   |||||||||||    
T  6483 ttagttgtaggacccaccatctattttttgtgtctgtctctttccaacttgcaaaatcccatttatttt 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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