View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7662_low_1 (Length: 550)

Name: NF7662_low_1
Description: NF7662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7662_low_1
NF7662_low_1
[»] chr7 (16 HSPs)
chr7 (156-550)||(39020800-39021195)
chr7 (7-91)||(39020651-39020735)
chr7 (312-422)||(43844817-43844927)
chr7 (312-421)||(43845824-43845933)
chr7 (312-421)||(4126716-4126825)
chr7 (35-84)||(1778159-1778208)
chr7 (496-550)||(39021279-39021333)
chr7 (222-295)||(3301806-3301879)
chr7 (32-84)||(3302007-3302059)
chr7 (312-422)||(5956462-5956572)
chr7 (238-288)||(1777962-1778012)
chr7 (156-198)||(29550074-29550116)
chr7 (32-85)||(11698835-11698888)
chr7 (312-422)||(5960928-5961038)
chr7 (254-301)||(29549971-29550018)
chr7 (156-193)||(11698934-11698971)
[»] chr2 (19 HSPs)
chr2 (304-489)||(29762129-29762313)
chr2 (222-302)||(4869003-4869083)
chr2 (156-301)||(17374690-17374834)
chr2 (236-299)||(34659646-34659709)
chr2 (156-206)||(17282529-17282579)
chr2 (156-199)||(1552178-1552221)
chr2 (156-198)||(3921083-3921125)
chr2 (32-85)||(3921171-3921224)
chr2 (32-83)||(1894984-1895035)
chr2 (156-198)||(11163639-11163681)
chr2 (35-85)||(17282433-17282483)
chr2 (36-85)||(1552083-1552132)
chr2 (317-358)||(35029861-35029902)
chr2 (234-302)||(17282606-17282673)
chr2 (32-84)||(17374893-17374944)
chr2 (222-296)||(33417070-33417144)
chr2 (317-358)||(1233728-1233769)
chr2 (317-358)||(34228175-34228216)
chr2 (317-358)||(34229074-34229115)
[»] chr3 (10 HSPs)
chr3 (7-84)||(43275529-43275606)
chr3 (235-300)||(43275326-43275391)
chr3 (236-296)||(3364171-3364231)
chr3 (156-200)||(893542-893586)
chr3 (317-422)||(35903717-35903823)
chr3 (222-281)||(18270379-18270438)
chr3 (269-300)||(25498447-25498478)
chr3 (156-191)||(43275435-43275470)
chr3 (32-84)||(893431-893483)
chr3 (263-299)||(27741822-27741858)
[»] chr6 (9 HSPs)
chr6 (312-489)||(34260139-34260317)
chr6 (32-84)||(21880996-21881048)
chr6 (222-282)||(34214053-34214113)
chr6 (312-422)||(6829924-6830034)
chr6 (156-199)||(20740083-20740126)
chr6 (312-489)||(34262054-34262231)
chr6 (312-421)||(6826581-6826690)
chr6 (156-205)||(3524158-3524207)
chr6 (43-84)||(3524057-3524098)
[»] chr1 (14 HSPs)
chr1 (222-301)||(615115-615194)
chr1 (236-302)||(6504428-6504494)
chr1 (234-296)||(11408466-11408528)
chr1 (222-302)||(39709670-39709751)
chr1 (312-422)||(2367478-2367588)
chr1 (235-296)||(27340261-27340322)
chr1 (32-84)||(34654516-34654568)
chr1 (32-84)||(39709491-39709543)
chr1 (32-85)||(25791201-25791254)
chr1 (32-85)||(34117623-34117676)
chr1 (222-295)||(34653271-34653344)
chr1 (162-205)||(34653363-34653406)
chr1 (236-285)||(34117490-34117539)
chr1 (156-192)||(25791119-25791155)
[»] chr8 (17 HSPs)
chr8 (156-302)||(10408199-10408345)
chr8 (222-298)||(20860676-20860752)
chr8 (312-486)||(17942886-17943059)
chr8 (234-302)||(5993997-5994065)
chr8 (312-421)||(17938198-17938307)
chr8 (35-84)||(5994189-5994238)
chr8 (36-84)||(6443596-6443644)
chr8 (156-206)||(5994094-5994144)
chr8 (318-421)||(11519379-11519483)
chr8 (156-205)||(20860767-20860816)
chr8 (313-358)||(42578733-42578778)
chr8 (317-415)||(11520033-11520131)
chr8 (313-358)||(6462615-6462660)
chr8 (317-413)||(42503054-42503150)
chr8 (38-82)||(10408406-10408450)
chr8 (369-413)||(12203287-12203331)
chr8 (369-413)||(12447715-12447759)
[»] scaffold0005 (2 HSPs)
scaffold0005 (156-299)||(250648-250793)
scaffold0005 (35-84)||(250852-250901)
[»] chr4 (18 HSPs)
chr4 (222-299)||(14566650-14566727)
chr4 (312-422)||(36385752-36385863)
chr4 (156-206)||(14566582-14566632)
chr4 (156-206)||(53201733-53201783)
chr4 (35-84)||(6409594-6409643)
chr4 (249-302)||(24958249-24958302)
chr4 (32-85)||(34227485-34227538)
chr4 (312-357)||(36386035-36386080)
chr4 (158-206)||(47519041-47519089)
chr4 (35-84)||(14566474-14566523)
chr4 (32-85)||(31360554-31360607)
chr4 (369-422)||(36381168-36381221)
chr4 (36-85)||(53201829-53201878)
chr4 (32-84)||(23054763-23054815)
chr4 (234-301)||(6409377-6409443)
chr4 (156-206)||(34227584-34227634)
chr4 (32-86)||(47518943-47518997)
chr4 (317-358)||(39311371-39311412)
[»] chr5 (21 HSPs)
chr5 (234-302)||(7270028-7270096)
chr5 (236-302)||(27170797-27170862)
chr5 (32-85)||(21600763-21600816)
chr5 (32-84)||(7767519-7767571)
chr5 (32-84)||(27170602-27170654)
chr5 (223-289)||(6030992-6031058)
chr5 (156-206)||(6989307-6989357)
chr5 (32-85)||(1157712-1157765)
chr5 (32-85)||(6989403-6989456)
chr5 (234-302)||(26656101-26656172)
chr5 (234-302)||(26927688-26927759)
chr5 (156-199)||(1157811-1157854)
chr5 (156-206)||(27170713-27170763)
chr5 (156-206)||(38959191-38959240)
chr5 (222-299)||(1377604-1377680)
chr5 (157-206)||(7767631-7767680)
chr5 (156-206)||(21600667-21600717)
chr5 (156-206)||(26656201-26656251)
chr5 (156-206)||(26927788-26927838)
chr5 (32-85)||(18696575-18696628)
chr5 (32-85)||(38958633-38958686)
[»] scaffold0402 (1 HSPs)
scaffold0402 (312-421)||(10879-10988)
[»] scaffold0009 (1 HSPs)
scaffold0009 (234-302)||(53836-53904)
[»] scaffold0341 (1 HSPs)
scaffold0341 (236-302)||(6111-6177)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 156 - 550
Target Start/End: Original strand, 39020800 - 39021195
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccataggnnnnnnnnnnnnnnnctttgattcataggtgtatgagttttccattggg 255  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||               |||||||||| | |||||| ||||||||||||||    
T  39020800 ctatttattgatttcggatatagtcatttgttaggaggcgtttcccataggttttttggatttttcctttgattcacatgtgtatcagttttccattggg 39020899  T
Q  256 ggctccacatctatcctttgtatgttgctactttatgactcctagcccgagtgcatctttgctcaatttaccccatttcaagacatggatgtgtgacatg 355  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39020900 ggctccacatctatcctttgtacgttgctactttacgactcctagcctgagtgcatctttgctcaatttaccccatttcaagacatggatgtgtgacatg 39020999  T
Q  356 tggnnnnnnnnnta-tcaatggttgtgattaaatggtttggaaaaagcaattttttaatgagaaaaaatcctacgcactctctactctgaaacaaatccc 454  Q
    |||          | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39021000 tggaaaaaaataaaatcaatggtcgtgattaaatggtttggaaaaagcaattttttaatgagaaaaaatcatacgcactctctactctgaaacaaatccc 39021099  T
Q  455 acgcgcttgcaaactctccttcttccttctcagattttcttaaataaaaatcaactatataaatctatgaaccgtctaatcttaaatcatacaatc 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39021100 acgcgcttgcaaactctccttcttccttctcagattttcttaaataaaaatcaactttataaatctatgaaccgtctaatcttaaatcatacaatc 39021195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 39020651 - 39020735
Alignment:
Q  7 tttggtgttcaggggttgtgtgtgagtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgtaacaac 91  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39020651 tttggtgttcaggggttgtgtgtgagtaagtggtggaagttgtttttgtggcagttgtgacaatgtttgaggattttgtaacaac 39020735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 312 - 422
Target Start/End: Original strand, 43844817 - 43844927
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| |||||||||||||||||||||||           |||||||| ||||||||||||| ||||||||||||||| || |    
T  43844817 ctttgctcaatttaccccatttaaagacatggatgtgtgacatgtgtaaaaaataaaatcaatggctgtgattaaatggcttggaaaaagcaattcttaa 43844916  T
Q  412 atgagaaaaaa 422  Q
    |||||||||||    
T  43844917 atgagaaaaaa 43844927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 421
Target Start/End: Complemental strand, 43845933 - 43845824
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||          |||||||||||||||||||||| ||||||||||||||| ||||    
T  43845933 ctttgctcaatttaccccatttgaagacatggatgtgcgacatatggaaaaaataaaatcaatggttgtgattaaatggcttggaaaaagcaattcttta 43845834  T
Q  412 atgagaaaaa 421  Q
    ||||| ||||    
T  43845833 atgaggaaaa 43845824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 4126716 - 4126825
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||           |||||||||||||||||||||| ||||||||| ||||| ||||    
T  4126716 ctttgctcaatttaccccatttgaagacatggatgcgtgacatgtgtaaataataaaatcaatggttgtgattaaatggcttggaaaaatcaattcttta 4126815  T
Q  412 atgagaaaaa 421  Q
    ||||| ||||    
T  4126816 atgaggaaaa 4126825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 1778208 - 1778159
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1778208 ggtggtggaagttgtttttgtggcagttgtgacaatgtttgaggattttg 1778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 39021279 - 39021333
Alignment:
Q  496 aaataaaaatcaactatataaatctatgaaccgtctaatcttaaatcatacaatc 550  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  39021279 aaataaaaatctactttataaatctatgaatcgtctaatcttaaatcatacaatc 39021333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 3301879 - 3301806
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgact 295  Q
    |||||||||| ||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||| ||||    
T  3301879 ctttgattcacaggtgtatgggttttccattaggagctccccatctatcatttatatgttgctactttaagact 3301806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 3302059 - 3302007
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3302059 gtgggtggtggaagttatttttgtggcagttgtgaccatgtttgaggattttg 3302007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 422
Target Start/End: Original strand, 5956462 - 5956572
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||           |||||||| ||||||||||||| ||||||||||||||| || |    
T  5956462 ctttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaataaaatcaatggctgtgattaaatggcttggaaaaagcaattcttaa 5956561  T
Q  412 atgagaaaaaa 422  Q
    |||| ||||||    
T  5956562 atgaaaaaaaa 5956572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 1778012 - 1777962
Alignment:
Q  238 tatgagttttccattgggggctccacatctatcctttgtatgttgctactt 288  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  1778012 tatgggttttccattgggggctccccatctattctttgtatgttgctactt 1777962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 29550116 - 29550074
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgttt 198  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  29550116 ctatttattgatttcggagatagccctttgttatgaggcgttt 29550074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 11698835 - 11698888
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||| ||||||||    
T  11698835 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgatgattttgt 11698888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 5961038 - 5960928
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||           |||||||| ||| ||||||||| ||| ||||||||||| || |    
T  5961038 ctttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaagaaaatcaatggctgtcattaaatggcttgaaaaaagcaattcttaa 5960939  T
Q  412 atgagaaaaaa 422  Q
    |||| ||||||    
T  5960938 atgaaaaaaaa 5960928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 29550018 - 29549971
Alignment:
Q  254 ggggctccacatctatcctttgtatgttgctactttatgactcctagc 301  Q
    |||||||  |||||||||||| ||||||||||||||| ||||||||||    
T  29550018 ggggctctccatctatcctttatatgttgctactttaagactcctagc 29549971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 11698934 - 11698971
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggagg 193  Q
    |||||||||||||||||| || ||||||||||||||||    
T  11698934 ctatttattgatttcggagatggccctttgttaggagg 11698971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 304 - 489
Target Start/End: Complemental strand, 29762313 - 29762129
Alignment:
Q  304 gagtgcatctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagca 403  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||          ||||||| |||||||||||||||||||||||| ||    
T  29762313 gagtgcatctttgctcaatttaccccatctcaagacatggatgtgtgacatgtggataaaataagatcaatgattgtgattaaatggtttggaaaaaaca 29762214  T
Q  404 attttttaatgagaaaaaatcctacgcactctctactctgaaacaaatcccacgcgcttgcaaactctccttcttccttctcagat 489  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||| ||||||||||||||||||||    
T  29762213 attttttaatgagaaaaaatcctacgcgctctctactc-gaaacaaatcctatgcgcttacaaaccctccttcttccttctcagat 29762129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 4869083 - 4869003
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||||||| ||||||| |  ||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||    
T  4869083 ctttgattcacaggtgtaaggattttcaattgggggctccccgtctatcctttgtatgttgctactttaagactcctagcc 4869003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 17374834 - 17374690
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccataggnnnnnnnnnnnnnnnctttgattcataggtgtatgagttttccattggg 255  Q
    |||||||||||||||||| |||||||| | ||||||||||||||| |||||               ||||||||||  |||||||||||||| |||| ||    
T  17374834 ctatttattgatttcggagatagccctctcttaggaggcgtttcctataggttttttggattttttctttgattcacgggtgtatgagtttttcattagg 17374735  T
Q  256 ggctccacatctatcctttgtatgttgctactttatgactcctagc 301  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||||||    
T  17374734 ggctccccatctatcctttgtatattgct-ctttaagactcctagc 17374690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 34659709 - 34659646
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactccta 299  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  34659709 tgtatgggttttctattgggagctcctcatctatcctttgtatgttgctactttaagactccta 34659646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 17282529 - 17282579
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17282529 ctatttattgatttcggagatagccctttgttaggaggcgtttcctatagg 17282579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 1552178 - 1552221
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttc 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1552178 ctatttattgatttcggagatagccctttgttaggaggcgtttc 1552221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 3921125 - 3921083
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgttt 198  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3921125 ctatttattgatttcggagatagccctttgttaggaggcgttt 3921083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 3921224 - 3921171
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  3921224 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 3921171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 1895035 - 1894984
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggatttt 83  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||    
T  1895035 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggatttt 1894984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 11163639 - 11163681
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgttt 198  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  11163639 ctatttattgattttggatatagccctttgttaggaggtgttt 11163681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 17282433 - 17282483
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    |||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  17282433 ggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 17282483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 1552083 - 1552132
Alignment:
Q  36 gtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  1552083 gtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 1552132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 35029902 - 35029861
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  35029902 ctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 17282606 - 17282673
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||||||||||| ||||||||||| | |||| ||||||||| |||||||||  || |||||||||||    
T  17282606 ggtgtatgagttttacattgggggcttcccatc-atcctttgtttgttgctaccgtaagactcctagcc 17282673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 17374944 - 17374893
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  17374944 gtgggtggtggaagttatttttgtggcagttgt-acgatgtttgaggattttg 17374893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 33417070 - 33417144
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactc 296  Q
    ||||||| |||  ||||||| ||||||||||| | || |  ||| |||||||||||||||||||||||| |||||    
T  33417070 ctttgatgcatgagtgtatgggttttccattgagtgcactccatatatcctttgtatgttgctactttacgactc 33417144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 1233728 - 1233769
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||    
T  1233728 ctcaatttaccccatttgaagtcatggatgtgtgacacgtgg 1233769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 34228175 - 34228216
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    |||||||||||||||||||||  || ||||||||||||||||    
T  34228175 ctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 34229115 - 34229074
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  34229115 ctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 43275606 - 43275529
Alignment:
Q  7 tttggtgttcaggggttgtgtgtgagtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275606 tttgatgttcaggggttgtgtgcgagtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 43275529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 43275391 - 43275326
Alignment:
Q  235 gtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctag 300  Q
    |||||||  ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  43275391 gtgtatggattttccatttggggctccccttctatcctttgtatgttgctactttatgactcctag 43275326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 3364171 - 3364231
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactc 296  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| || ||||||| |||||    
T  3364171 tgtatgagtttttcattgggggctcctcatctatcctttgtatgctgttactttaagactc 3364231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 893542 - 893586
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcc 200  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  893542 ctatttattgatttcagagatagccctttgttaggaggcgtttcc 893586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 35903717 - 35903823
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnnta--tcaatggttgtgattaaatggtttggaaaaagcaattttttaatg 414  Q
    |||||||||||||||||||||  |||||||||||||||||||          |  ||||||||||||||||||| |||| ||||| |||||| |||||||    
T  35903717 ctcaatttaccccatttcaagttatggatgtgtgacatgtggggaaaaaataaaatcaatggttgtgattaaattgttt-gaaaatgcaattctttaatg 35903815  T
Q  415 agaaaaaa 422  Q
    | ||||||    
T  35903816 aaaaaaaa 35903823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 18270379 - 18270438
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgtt 281  Q
    ||||||||||  |||||||| ||||| |||||| ||| || |||||||||||||||||||    
T  18270379 ctttgattcacgggtgtatgggtttttcattggaggcaccccatctatcctttgtatgtt 18270438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 25498478 - 25498447
Alignment:
Q  269 tcctttgtatgttgctactttatgactcctag 300  Q
    ||||||||||||||||||||||||||||||||    
T  25498478 tcctttgtatgttgctactttatgactcctag 25498447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 43275470 - 43275435
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttagga 191  Q
    |||||||||||||||||| |||||||||||||||||    
T  43275470 ctatttattgatttcggagatagccctttgttagga 43275435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 893431 - 893483
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||||||||  ||||| ||||||| |||||| | |||||||    
T  893431 gtgggtggtggaagttgttttgatggcagttgtgacgatgtttaaagattttg 893483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 27741822 - 27741858
Alignment:
Q  263 catctatcctttgtatgttgctactttatgactccta 299  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  27741822 catctatcttttgtatgttgctactttacgactccta 27741858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 312 - 489
Target Start/End: Original strand, 34260139 - 34260317
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||            | ||||||||||||||||||  ||| ||||| ||||| ||||    
T  34260139 ctttcctcaatttaccccatttcaagtcatggatgtgtgacatgtgtaaaaattaaattgaatggttgtgattaaatgacttgaaaaaaacaattcttta 34260238  T
Q  412 atgagaaaaaatcctacgcactctctactctgaaacaaat-cccacgcgcttgcaaactctccttcttccttctcagat 489  Q
    ||||  |||||| |||||| ||||||  | ||| |||||| || |||||| | ||||||||||||||||||||||||||    
T  34260239 atgaagaaaaatactacgcgctctctgttatgatacaaatgccaacgcgcgttcaaactctccttcttccttctcagat 34260317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 21881048 - 21880996
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  21881048 gtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttg 21880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 34214053 - 34214113
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttg 282  Q
    |||||||||| |||||||||||||||||||||| |||||| ||  ||||||||||||||||    
T  34214053 ctttgattcacaggtgtatgagttttccattggaggctcctcacatatcctttgtatgttg 34214113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 6830034 - 6829924
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||           |||||||| ||||||||||||| ||||||||||||||| || |    
T  6830034 ctttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaagaaaatcaatggctgtgattaaatggcttggaaaaagcaattcttaa 6829935  T
Q  412 atgagaaaaaa 422  Q
    |||| ||||||    
T  6829934 atgaaaaaaaa 6829924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 20740126 - 20740083
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttc 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  20740126 ctatttattgatttcggagatagccctttgttaggaggcgtttc 20740083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 489
Target Start/End: Complemental strand, 34262231 - 34262054
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| ||||||||||||||||| |||  ||||||||||||||||||            | ||||| |||||||||||| || ||||||||||||| ||||    
T  34262231 ctttcctcaatttaccccattttaagttatggatgtgtgacatgtgtataaaataaattgaatggctgtgattaaatgctt-ggaaaaagcaattcttta 34262133  T
Q  412 atgagaaaaaatcctacgcactctctactctgaaacaaatccca-cgcgcttgcaaactctccttcttccttctcagat 489  Q
    ||||  |||| | |||| | ||||||  | ||| |||||| ||| ||||| | ||||||||||||||||||||||||||    
T  34262132 atgaagaaaagtactacacgctctctgttatgatacaaatgccaacgcgcgtacaaactctccttcttccttctcagat 34262054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 6826581 - 6826690
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| |||||||||||||||||| |   ||||||||||||||||||           |||||||| ||||||||||||| ||||||||||||||| || |    
T  6826581 ctttcctcaatttaccccatttctaataatggatgtgtgacatgtgtataaaagaaaatcaatggctgtgattaaatggcttggaaaaagcaattcttaa 6826680  T
Q  412 atgagaaaaa 421  Q
    |||| |||||    
T  6826681 atgaaaaaaa 6826690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 3524158 - 3524207
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatag 205  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||| ||||    
T  3524158 ctatttattgattttggagatagccctttgttaagaggcgtttcctatag 3524207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3524057 - 3524098
Alignment:
Q  43 aagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  3524057 aagttgtttttgtggcagttgtgatgatgtttgaggattttg 3524098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 615194 - 615115
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagc 301  Q
    ||||||||||  ||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  615194 ctttgattcacgggtgtatggattttccattgggggctccccatctatcctttgtatgttgctactttaagactcctagc 615115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 6504428 - 6504494
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||| |||||    
T  6504428 tgtatgggttttccattgggggctccccatctatcctttatatgttgctacattaagactcatagcc 6504494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 11408466 - 11408528
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactc 296  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| |||||    
T  11408466 ggtgtatgagtttttcattgggggctccccgtctatcctttgtatgttactactttaagactc 11408528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 39709670 - 39709751
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccac-atctatcctttgtatgttgctactttatgactcctagcc 302  Q
    ||||||||||  ||| ||||||||||||||| |||||||| | ||||||| ||||||||||||||||||| |||||| ||||    
T  39709670 ctttgattcacgggtatatgagttttccatttggggctcctccatctatcttttgtatgttgctactttaagactccaagcc 39709751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 2367588 - 2367478
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||           ||||||||  |||||||||||| ||||||||||||||| || |    
T  2367588 ctttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaataaaatcaatggccgtgattaaatggcttggaaaaagcaattcttaa 2367489  T
Q  412 atgagaaaaaa 422  Q
    |||||||||||    
T  2367488 atgagaaaaaa 2367478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 27340261 - 27340322
Alignment:
Q  235 gtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactc 296  Q
    |||||||||||||||||||  |||| | |||||||||||| ||||||||||||||| |||||    
T  27340261 gtgtatgagttttccattgaaggcttcccatctatcctttttatgttgctactttaagactc 27340322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 34654568 - 34654516
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||    
T  34654568 gtgggtggtggaagttgtttttgtgacagttgcgacgatgtttgaggattttg 34654516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 39709491 - 39709543
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  39709491 gtgggtggtgaaagttgtttttgtggcagttgtggcgatgtttgaggattttg 39709543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 25791254 - 25791201
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| ||||||||||||||| || ||||||| ||| |||||||||||||    
T  25791254 gtgggtggtagaagttgtttttgtgacagttgtgacgatgcttgaggattttgt 25791201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 34117676 - 34117623
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    |||||||||||||||||||||||||||| |||  || ||| |||||||||||||    
T  34117676 gtgggtggtggaagttgtttttgtggcagttgcaacgatgcttgaggattttgt 34117623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 34653344 - 34653271
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgact 295  Q
    ||||||||||  |||||||||||||| ||||| || |||| |||||||||||||| |||| ||| |||| ||||    
T  34653344 ctttgattcacgggtgtatgagtttttcattgaggactcctcatctatcctttgtttgttactattttaagact 34653271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 34653406 - 34653363
Alignment:
Q  162 attgatttcggatatagccctttgttaggaggcgtttcccatag 205  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||    
T  34653406 attgatttcggatataaccctttgttaggaggtgtttcctatag 34653363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 34117539 - 34117490
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgcta 285  Q
    |||||| || |||||||| ||||| | |||||||||||||||||||||||    
T  34117539 tgtatgggtcttccattgagggcttcccatctatcctttgtatgttgcta 34117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 25791155 - 25791119
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggag 192  Q
    |||||||||||||||||| |||||||| |||||||||    
T  25791155 ctatttattgatttcggagatagccctatgttaggag 25791119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 302
Target Start/End: Complemental strand, 10408345 - 10408199
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccataggnnnnnnnnnnnnnnnctttgattcataggtgtatgagttttccattggg 255  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||| |||||               ||||||||||| |||||||| |||||||||||||    
T  10408345 ctatttattgatttcggagataaccctttgttaggaggtgtttcctataggttttttggattttatctttgattcatgggtgtatgggttttccattggg 10408246  T
Q  256 ggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||| ||||||| ||||||||||||| ||| || |||| ||||||    
T  10408245 ggctccccatctatgctttgtatgttgcaactctaagacttctagcc 10408199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 20860752 - 20860676
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcct 298  Q
    ||||||||||   ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  20860752 ctttgattcacttgtgtatgagttttccattgggagctccccatctatcctttgtatgttgctactttaagactcct 20860676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 486
Target Start/End: Complemental strand, 17943059 - 17942886
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| |||||||||||||||||||||||           |||||||| ||||||||||||| ||||||||| ||||| || |    
T  17943059 ctttgctcaatttaccccatttgaagacatggatgtgtgacatgtgtaaataataaaatcaatggctgtgattaaatggcttggaaaaatcaattcttaa 17942960  T
Q  412 atgag-aaaaaatcctacgcactctctactctgaaacaaatcccacgcgcttgcaaactctccttcttccttctca 486  Q
    ||||| |||||  || |||  | |||| || ||| | |||| |||||| | | |||||||||||||||||||||||    
T  17942959 atgagtaaaaagaccaacg--cgctctgctatgagaaaaataccacgcccgtacaaactctccttcttccttctca 17942886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 5994065 - 5993997
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||||| |||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||    
T  5994065 ggtgtatgggttttccattggaggttccccatctatcctttgtatgttgctactttaagactcctagcc 5993997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 17938198 - 17938307
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| || ||||||||||| || ||||||          |||||||| ||||||||||||| ||||||||| ||||| ||||    
T  17938198 ctttgctcaatttaccccatttgaatacatggatgtgcgaaatgtggaaaaaataaaatcaatgggtgtgattaaatggattggaaaaatcaattcttta 17938297  T
Q  412 atgagaaaaa 421  Q
    ||||| ||||    
T  17938298 atgaggaaaa 17938307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 5994238 - 5994189
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  5994238 ggtggtggaagttgtttttgtggtagttgtgacgatgtttgaggattttg 5994189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 6443644 - 6443596
Alignment:
Q  36 gtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  6443644 gtggtggaagttgtttttgtggcagttgtgatgatgtttgaggattttg 6443596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 5994144 - 5994094
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||| |||||    
T  5994144 ctatctattgatttcgaatatagctctttgttaggaggcgtttcctatagg 5994094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 11519379 - 11519483
Alignment:
Q  318 tcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnnta-tcaatggttgtgattaaatggtttggaaaaagcaattttttaatgag 416  Q
    |||||||||||||||||||  ||| ||||||||||||||||          | ||||| | |||||||||| |||||||||||||||||| ||||||||     
T  11519379 tcaatttaccccatttcaaatcatagatgtgtgacatgtggaaaaaaataaaatcaatagctgtgattaaaaggtttggaaaaagcaattctttaatgaa 11519478  T
Q  417 aaaaa 421  Q
    |||||    
T  11519479 aaaaa 11519483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 20860816 - 20860767
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatag 205  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||| ||||    
T  20860816 ctatttattggtttcggagatagcccttttttaggaggcgtttcctatag 20860767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 42578733 - 42578778
Alignment:
Q  313 tttgctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  42578733 tttgctcaatttaccccatttcaagtcatagatgtatgacatgtgg 42578778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 11520131 - 11520033
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaattttttaatga 415  Q
    |||||||||| |||||| ||| ||| |||||||||||||||           ||||||||||||||||||| ||||||| |||| ||||| ||||||||    
T  11520131 ctcaatttacaccatttaaagtcatagatgtgtgacatgtgaaaaaaataaaatcaatggttgtgattaaaaggtttggtaaaaacaattatttaatga 11520033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 6462660 - 6462615
Alignment:
Q  313 tttgctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||||||||||| | | ||||| ||||||||||    
T  6462660 tttgctcaatttaccccatttcaagtcctagatgtatgacatgtgg 6462615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 42503054 - 42503150
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaattttttaat 413  Q
    |||||||||||||||||||   ||| |||||||||||||| |          |||||||| |||||||||| ||||||||||| |||||| ||||||    
T  42503054 ctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggtttggaaaaggcaattctttaat 42503150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 10408450 - 10408406
Alignment:
Q  38 ggtggaagttgtttttgtggcacttgtgacaatgtttgaggattt 82  Q
    |||||||||||||||||||||| ||| ||| ||||||||| ||||    
T  10408450 ggtggaagttgtttttgtggcagttgcgacgatgtttgagaattt 10408406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 12203331 - 12203287
Alignment:
Q  369 atcaatggttgtgattaaatggtttggaaaaagcaattttttaat 413  Q
    ||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  12203331 atcaatgattgtgattaaaaggtttgaaaaaagcaattctttaat 12203287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 12447759 - 12447715
Alignment:
Q  369 atcaatggttgtgattaaatggtttggaaaaagcaattttttaat 413  Q
    ||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  12447759 atcaatgattgtgattaaaaggtttgaaaaaagcaattctttaat 12447715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 250793 - 250648
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg--nnnnnnnnnnnnnnnctttgattcataggtgtatgagttttccattg 253  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||                 ||||||||||  |||||||||| |||||||||    
T  250793 ctatttactgatttcggagatagccctttgttaggaggcgtttcctatagggtttttggattttttttctttgattcacgggtgtatgaggtttccattg 250694  T
Q  254 ggggctccacatctatcctttgtatgttgctactttatgactccta 299  Q
    |||||||| |||||||| |||||||||||||| |||| ||||||||    
T  250693 ggggctccccatctatcatttgtatgttgctattttaagactccta 250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 250901 - 250852
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||||||||    
T  250901 ggtggtggaagttgtttatgtggctgttgtgactatgtttgaggattttg 250852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 14566650 - 14566727
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactccta 299  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||    
T  14566650 ctttgattcacgggtgtatgaggtttccattgggggctccccatctatcatttgtatgttgctattttaagactccta 14566727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 36385863 - 36385752
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnnta-tcaatggttgtgattaaatggtttggaaaaagcaatttttt 410  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||           | ||||||| ||||||||||||| ||||||||||||||| |||    
T  36385863 ctttgctcaatttaccccatttctagtaatggatgtgtgacatgtgtaaaaaaaaaaaatcaatggctgtgattaaatggcttggaaaaagcaattcttt 36385764  T
Q  411 aatgagaaaaaa 422  Q
    ||||||||||||    
T  36385763 aatgagaaaaaa 36385752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 14566582 - 14566632
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  14566582 ctatttactgatttcggagatagccctttgttaggaggcgtttcctatagg 14566632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 53201783 - 53201733
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  53201783 ctatttattgatttcggagatagccctttgttaggaggtgtttcctatagg 53201733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 6409643 - 6409594
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  6409643 ggtggtggaagttgtttttgtggcagttgtgatgatgtttgaggattttg 6409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 24958249 - 24958302
Alignment:
Q  249 cattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    ||||| || |||| |||||||||||||||||||||||||||| |||||||||||    
T  24958249 cattgcggtctccccatctatcctttgtatgttgctactttaagactcctagcc 24958302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34227485 - 34227538
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  34227485 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 34227538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 36386080 - 36386035
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtg 357  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  36386080 ctttgctcaatttaccccatttctagtcatggatgtgtgacatgtg 36386035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 47519041 - 47519089
Alignment:
Q  158 atttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  47519041 atttattgatttcggagatagccctttgttaggaggcatttccaatagg 47519089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 14566474 - 14566523
Alignment:
Q  35 ggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||||||||    
T  14566474 ggtggtggaagttgtttatgtggctgttgtgactatgtttgaggattttg 14566523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 31360554 - 31360607
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||| | ||||||| |||||||| ||||||||    
T  31360554 gtgggtggtagaagttgtttttgtggtaattgtgacgatgtttgaagattttgt 31360607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 36381168 - 36381221
Alignment:
Q  369 atcaatggttgtgattaaatggtttggaaaaagcaattttttaatgagaaaaaa 422  Q
    ||||||||||||||||||||| ||||||||||||| || || ||||| ||||||    
T  36381168 atcaatggttgtgattaaatgatttggaaaaagcagttcttaaatgacaaaaaa 36381221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 53201878 - 53201829
Alignment:
Q  36 gtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  53201878 gtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 53201829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 23054763 - 23054815
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||||||||||||||| ||    ||||||||||||||||||    
T  23054763 gtgggtggtggaagttgtttttgtggcagtttcagcaatgtttgaggattttg 23054815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 6409443 - 6409377
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagc 301  Q
    |||||||| |||||||||||| |||||  || ||||||||| |||||||||||||||  |||||||||    
T  6409443 ggtgtatgggttttccattggaggctctcca-ctatcctttatatgttgctactttaatactcctagc 6409377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 34227584 - 34227634
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||||||||||| |||||||||||||| |||| | |||| |||||    
T  34227584 ctatttattgatttcggagatagccctttgttaagaggtgattcctatagg 34227634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 47518943 - 47518997
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgta 86  Q
    ||||||||| |||||||||||||||||| ||||| | ||| |||||| |||||||    
T  47518943 gtgggtggtagaagttgtttttgtggcagttgtggcgatgcttgaggtttttgta 47518997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 39311412 - 39311371
Alignment:
Q  317 ctcaatttaccccatttcaagacatggatgtgtgacatgtgg 358  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  39311412 ctcaatttaccccattttaagtcatagatgtgtgacatgtgg 39311371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 7270096 - 7270028
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    ||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||    
T  7270096 ggtgtatgaattttccattggggactccctatctatcctttgtatgttgctactttaagactcctagcc 7270028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 27170797 - 27170862
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  27170797 tgtatgggttttccattgagggctccccatctatcctttgtatgttgcta-tttaagactcctagcc 27170862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 21600816 - 21600763
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  21600816 gtgggtggtagaagttgtttttgtggcagttgtgacgatgtttgaggattttgt 21600763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 7767519 - 7767571
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  7767519 gtgggtggtggaagttgtttttgtggcagttgcgacgatgtttgaggattttg 7767571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 27170602 - 27170654
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 84  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  27170602 gtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttg 27170654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 6030992 - 6031058
Alignment:
Q  223 tttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctacttt 289  Q
    |||||||||  |||||||| ||||||||||||| ||||| | ||||||||||||||||| |||||||    
T  6030992 tttgattcacgggtgtatgggttttccattgggagctccccgtctatcctttgtatgttactacttt 6031058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 6989357 - 6989307
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  6989357 ctatttattgatttcggagatagccctttgttaggagacgtttcctatagg 6989307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 1157712 - 1157765
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  1157712 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 1157765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 6989456 - 6989403
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||    
T  6989456 gtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgt 6989403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 26656172 - 26656101
Alignment:
Q  234 ggtgtatgagttttcca---ttgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||||||||||||||   || |||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  26656172 ggtgtatgagttttccaatattaggggctccccatctatcctttgtatattgatactttaagactcctagcc 26656101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 26927759 - 26927688
Alignment:
Q  234 ggtgtatgagttttcca---ttgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||||||||||||||   || |||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  26927759 ggtgtatgagttttccaatattaggggctccccatctatcctttgtatattgatactttaagactcctagcc 26927688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 1157811 - 1157854
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttc 199  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  1157811 ctatttattgatttcggagatagccatttgttaggaggcgtttc 1157854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 27170713 - 27170763
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||| |||||    
T  27170713 ctatttattggtttcggagatagccatttgttaggaggcgtttcctatagg 27170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 38959191 - 38959240
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  38959191 ctatttattgatt-cggagatagccctttgttaggaggcgtttcctatagg 38959240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 1377680 - 1377604
Alignment:
Q  222 ctttgattcataggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactccta 299  Q
    ||||||||||| |||||||| || ||||||| ||  |||| |||||||| ||||||||||| ||||||| ||||||||    
T  1377680 ctttgattcatgggtgtatgggtcttccattagga-ctccccatctatcatttgtatgttgttactttaagactccta 1377604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 7767631 - 7767680
Alignment:
Q  157 tatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||| |||||    
T  7767631 tatttattgattttggagataaccctttgttaggaggcgtttcctatagg 7767680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 21600717 - 21600667
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||||||||||| | ||||||| ||||||||||||| ||||||| |||||    
T  21600717 ctatttattgattccagatatagtcctttgttaggagacgtttcctatagg 21600667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 26656251 - 26656201
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||| ||||||||||||  ||| ||||||||||||||||||||| |||||    
T  26656251 ctattaattgatttcggagttagtcctttgttaggaggcgtttcctatagg 26656201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 26927838 - 26927788
Alignment:
Q  156 ctatttattgatttcggatatagccctttgttaggaggcgtttcccatagg 206  Q
    ||||| ||||||||||||  ||| ||||||||||||||||||||| |||||    
T  26927838 ctattaattgatttcggagttagtcctttgttaggaggcgtttcctatagg 26927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 18696628 - 18696575
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    |||||||||| |||||||| |||||||| ||| ||| ||| |||||||||||||    
T  18696628 gtgggtggtgaaagttgttattgtggcagttgcgacgatgcttgaggattttgt 18696575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 38958633 - 38958686
Alignment:
Q  32 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttgt 85  Q
    ||||||||| ||||||||||||||| || | ||||| ||| |||||||||||||    
T  38958633 gtgggtggtagaagttgtttttgtgtcagtagtgacgatgcttgaggattttgt 38958686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 10879 - 10988
Alignment:
Q  312 ctttgctcaatttaccccatttcaagacatggatgtgtgacatgtggnnnnnnnnntatcaatggttgtgattaaatggtttggaaaaagcaatttttta 411  Q
    |||||||||||||||||||||| |||||||||||||||||||||||           |||||||| ||||||||||||| ||||||||| ||||| || |    
T  10879 ctttgctcaatttaccccatttgaagacatggatgtgtgacatgtgtaaataatagaatcaatggctgtgattaaatggcttggaaaaatcaattcttaa 10978  T
Q  412 atgagaaaaa 421  Q
    ||||| ||||    
T  10979 atgagtaaaa 10988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 53904 - 53836
Alignment:
Q  234 ggtgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    ||||||||||||| | |||||| ||||| ||||||||| |||||||||||||||||| |||||||||||    
T  53904 ggtgtatgagtttacaattgggtgctccccatctatccattgtatgttgctactttacgactcctagcc 53836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 6111 - 6177
Alignment:
Q  236 tgtatgagttttccattgggggctccacatctatcctttgtatgttgctactttatgactcctagcc 302  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||| |||||    
T  6111 tgtatgggttttccattgggggctccccatctatcctttatatgttgctacattaagactcatagcc 6177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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