View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7662_low_3 (Length: 266)
Name: NF7662_low_3
Description: NF7662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7662_low_3 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 5225 - 5459
Alignment:
| Q |
20 |
tgcaactccaattccactccacaaactcaaaaccaacactactatccctatattcatcatagagaggtccaaaaatgccattgaaaaatgaggtaaataa |
119 |
Q |
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| T |
5225 |
tgcaactccaattccactccacaaactcaaaaccaacactactatccctatattcatcatagagaggtccaaaaatgccattgaaaaatgaggtaaataa |
5324 |
T |
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| Q |
120 |
ttgtaatggctaatggggtgtgtgtggaaagagagagggaattggatgatgaaaatgtgaaatgagcaaagctatatatgtagtggtggatgaggcaaag |
219 |
Q |
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| T |
5325 |
ttgtaatggctaatggggtgtgtgtggaaagagagagggaattggatgatgaaaatgtgaaatgagcaaagctatatatgtagtggtggatgaggcaaag |
5424 |
T |
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| Q |
220 |
atttctaaaggcttttacgtatggttgaggatatt |
254 |
Q |
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| T |
5425 |
atttctaaaggcttttacgtacggttgaggatatt |
5459 |
T |
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