View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7663_low_1 (Length: 566)
Name: NF7663_low_1
Description: NF7663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7663_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 13887673 - 13888037
Alignment:
| Q |
17 |
gttttaaccgggacattcgtctttactgttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttga |
116 |
Q |
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| T |
13887673 |
gttttaaccgggacattcgtctttactgttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaaccctaacaaacttca |
13887772 |
T |
|
| Q |
117 |
atatgccaactgtatttctgttatgac-agttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaatag |
215 |
Q |
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| T |
13887773 |
acatgccagctgtatttctgttatgaccagttagaggagttgtgttactatttagttagtgtatgatggatataatgtactctcattagcttataaatag |
13887872 |
T |
|
| Q |
216 |
gtgcttgtacattgtaacagattcattcattcgataatacatttttctcctttctattcactttacttctctcattttgagtttcttattatggtatcag |
315 |
Q |
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| T |
13887873 |
gtgcttgtacattgtaacagattcattcattcgataatacatttttcccctttctattcactttacttctctcattttgagtttcttattatggtatcag |
13887972 |
T |
|
| Q |
316 |
aagccttctctttggagaaggtggttacgattaagttacgcatcatttccgccatggatgcgtga |
380 |
Q |
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| T |
13887973 |
aagccttctctttggagaaggtggttacgattaagttacgcatcatttccgcaatggatgcgtga |
13888037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 13892359 - 13892619
Alignment:
| Q |
46 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacag |
145 |
Q |
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| T |
13892359 |
tgttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaatatgccaactgtatttctgttatgacag |
13892458 |
T |
|
| Q |
146 |
ttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcat |
245 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13892459 |
ttagatgagttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgcacattgtaacagattcattcat |
13892558 |
T |
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| Q |
246 |
tcgataatacatttttctcctttctattcactttacttctctcattttgagtttcttatta |
306 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13892559 |
tcaataatacatttttctcctttctattcactttacttctctcattttgagtttcttatta |
13892619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 13888135 - 13888211
Alignment:
| Q |
475 |
gtgttgattcctgaatcttccattcnnnnnnnattcttcaccgatcaaatgatggtacataatcaagatccaacaca |
551 |
Q |
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| T |
13888135 |
gtgttgattcctgaatcttccattctttttttattcttcaccgatcaaatgatggtgcgtaatcaagatccaacaca |
13888211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 11021606 - 11021525
Alignment:
| Q |
297 |
tttcttattatggtatcagaagccttctctttggagaaggtggttacgattaagttacgcatcatttccgccatggatgcgt |
378 |
Q |
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| T |
11021606 |
tttcttaatatggtatcagaagtcttctcttgagagaaggttgttacgattcagttacgcttctcttccgccatggatgcgt |
11021525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 46 - 275
Target Start/End: Original strand, 27816210 - 27816439
Alignment:
| Q |
46 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaat-atgccaactgtatttctgttatgaca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| || |||||| |||| |||||||| ||||| |
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| T |
27816210 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
27816308 |
T |
|
| Q |
145 |
gttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattca |
244 |
Q |
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|||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
27816309 |
gttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatagatgcttacacattgtaactaattcattca |
27816408 |
T |
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| Q |
245 |
ttcgataatacatttttctcctttctattca |
275 |
Q |
| |
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|| |||||||| ||| || |||||||||| |
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| T |
27816409 |
atcaataatacactttcatcttttctattca |
27816439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 12147438 - 12147303
Alignment:
| Q |
172 |
tagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcattcgataatacatttttctcctttcta |
271 |
Q |
| |
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|||| |||||||| || ||||||| |||| ||||||||||||| || | || |||||||||| | |||||||||| |||| | | ||||||||||||| |
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| T |
12147438 |
tagtatatgatagctacaatgtacactcaatagcttataaataagtacatgctcattgtaacaaactcattcattcaataacaga-atttctcctttcta |
12147340 |
T |
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| Q |
272 |
ttcactttact--tctctcattttgagtttcttatta |
306 |
Q |
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||||||| | | |||||||||||||||||||||||| |
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| T |
12147339 |
ttcacttcatttctctctcattttgagtttcttatta |
12147303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 45 - 243
Target Start/End: Original strand, 15094696 - 15094893
Alignment:
| Q |
45 |
ttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgaca |
144 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||||| ||||||| ||||| |
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| T |
15094696 |
ttgttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccaactgtaattctgtt-tgaca |
15094794 |
T |
|
| Q |
145 |
gttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattc |
243 |
Q |
| |
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|||||| | | ||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||| |
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| T |
15094795 |
gttagagtaatagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcattc |
15094893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 198 - 380
Target Start/End: Original strand, 15094897 - 15095084
Alignment:
| Q |
198 |
tcattagcttataaataggtgcttgtacattgtaacagattcattc-attcgataatacatttttctcc--tttctattcactttacttctctcatt--t |
292 |
Q |
| |
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||||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| | ||||||| ||||||||| ||| | |||||| || | |
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| T |
15094897 |
tcattagcttataaataagtgcttacacattgtaacccattcattccattcaataataaaactttctccattttctattctcttcatttctctgtttgtt |
15094996 |
T |
|
| Q |
293 |
tgagtttcttattatggtatcagaagccttctctttggagaaggtggttacgattaagttacgcatcatttccgccatggatgcgtga |
380 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||| | |||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
15094997 |
tgagtttgttattagggtatccgaagccttctcttggtagaaggtggtcacgattcagttacgcatcatttccgcaatggatgcgtga |
15095084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 18291734 - 18291879
Alignment:
| Q |
46 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacag |
145 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||| | || |||| ||||||||||||| |||||| |
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| T |
18291734 |
tgttacaaaataaaga---agatgaagttacttgtgatgcaagtaacttgagcaaaccctaacaaactgtactaggccagctgtatttctgttgtgacag |
18291830 |
T |
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| Q |
146 |
ttagatgag-ttgtgttactatgcagttagtgtatgatagatataatgt |
193 |
Q |
| |
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||||| || | |||||||| || |||||| ||||||||||||||||| |
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| T |
18291831 |
ttagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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